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Cover Page

The handle http://hdl.handle.net/1887/19743 holds various files of this Leiden University dissertation.

Author: Paul, Petra

Title: The systems biology of MHC class II antigen presentation Date: 2012-09-06

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The Systems Biology of MHC Class II Antigen Presentation

Petra Paul

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The Systems Biology of

MHC Class II Antigen Presentation

Proefschrift ter verkrijging van

de graad van Doctor aan de Universiteit Leiden,

op gezag van Rector Magnificus prof.mr. P.F. van der Heijden, volgens besluit van het College voor Promoties

te verdedigen op donderdag 6 september 2012 klokke 11.15 uur

door

Petra Paul

geboren te Wenen, Oostenrijk in 1980

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Promotiecommissie

Promotor: Prof. Dr. J. J. Neefjes Referent: Prof. Dr. Tom H. M. Ottenhoff Overige leden: Prof. Dr. J. Borst

Universiteit van Amsterdam Prof. Dr. M. van Ham Universiteit van Amsterdam

Prof. Dr. H. Overkleeft Prof. Dr. E. J. H. J. Wiertz Universiteit Utrecht

© 2012 P. Paul

Cover and Art Work: Wilhelm Paul

The research described in this thesis was performed at the Department of Cell Biology II at the Netherlands Cancer Institute (Antoni van Leeuwenhoek Ziekenhuis, NKI/AvL) under the supervision of Prof. Dr. J. Neefjes and was supported by an EEC Marie Curie Research Training Network, an ERC program grant, the Dutch Cancer Society, NWO ALW and CW and the Center for Biomedical Genetics (CBG).

Financial support for the publication of this thesis was provided by: The Netherlands Cancer Institute and BD Biosciences.

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Table of Contents

Introduction Towards a Systems Understanding of MHC Class II Antigen Presentation 7 Nature Reviews Immunology, 2011 Nov 11;11(12):823-3

Chapter 1 A Genome-wide Multi-Dimensional RNAi Screen Reveals Pathways controlling 19 MHC Class II Antigen Presentation

Cell. 2011 Apr 15;145(2):268-83

Chapter 2 Supplemental Data 39

Cell. 2011 Apr 15;145(2):268-83

Chapter 3 Routes to manipulate MHC Class II Antigen Presentation 55 Current Opinion in Immunology, 2011 Feb;23(1):88-95

Chapter 4 Studying MHC Class II Transport in Dendritic Cells 67 Methods in Molecular Biology, 2012 (in press)

Discussion Summary & Discussion 81

Nederlandse Samenvatting

Appendices Curriculum vitae 89

List of Publications Acknowledgements

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