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Manipulations of the ubiquitin proteasome system and their effects on antigen presentation Groothuis, T.A.M.

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Manipulations of the ubiquitin proteasome system and

their effects on antigen presentation

Groothuis, T.A.M.

Citation

Groothuis, T. A. M. (2006, November 1). Manipulations of the ubiquitin

proteasome system and their effects on antigen presentation. Retrieved from

https://hdl.handle.net/1887/4956

Version: Publisher's Version

License: Licence agreement concerning inclusion of doctoralthesis in the Institutional Repository of the University of Leiden

Downloaded from: https://hdl.handle.net/1887/4956

Note: To cite this publication please use the final published version (if

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Manipulations of the

Ubiquitin Proteasome System

and Their Effects on

Antigen Presentation

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Manipulations of the Ubiquitin Proteasome System

and Their Effects on Antigen Presentation

Proefschrift ter verkrijging van

de graad van Doctor aan de Universiteit Leiden, op gezag van de Rector Magnificus Dr. D.D. Breimer,

hoogleraar in de faculteit der Wiskunde en Natuurwetenschappen en die der Geneeskunde,

volgens besluit van het College voor Promoties te verdedigen op woensdag 1 november 2006

klokke 13.45 uur door

Tom Alphonsus Maria Groothuis geboren te Almelo

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Promotiecommissie:

Promotor: Prof. Dr. J.J. Neefjes Referent: Prof. Dr. P.J. Peters

Vrije Universiteit, Amsterdam Overige Leden: Prof. Dr. E.J.H.J. Wiertz

Prof. Dr. T.H.M. Ottenhoff Prof. Dr. W.H. Moolenaar Dr. E.A.J. Reits

Universiteit van Amsterdam, Amsterdam Dr. N.P. Dantuma

Karolinska Instituut, Stockholm, Zweden

Printed by Ponsen & Looijen, Wageningen, The Netherlands ISBN-10: 90-6464-040-8

ISBN-13: 978-90-6464-040-7

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"It never hurts to help!"

Eek the Cat

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Contents:

Page

Scope of the thesis 9

Introduction

Chapter 1 The ins and outs of intracellular peptides and antigen 11 presentation by MHC class I molecules.

Current Topics in Micrbiology and Immunology Introduction

Chapter 2 MHC class I alleles and their exploration of the 25 antigen-processing machinery.

Immunological Reviews

Chapter 3 The many roads to cross-presentation 47 Journal of Experimental Medicine

Chapter 4 A dynamic ubiquitin equilibrium couples proteasomal 57 activity to chromatin remodeling

Journal of Cell Biology

Chapter 5 Ubiquitin crosstalk connecting cellular processes 71 Submitted

Chapter 6 Radiation modulates the peptide repertoire, 81 enhances MHC class I expression, and induces successful antitumor immunotherapy

Journal of Experimental Medicine

Summary and discussion 99

Nederlandse Samenvatting & Addendum 103

Curriculum Vitae 115

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The studies described in this thesis were performed at the Department of Immunology at the Netherlands Cancer Institute (NKI), Amsterdam. This study was financially supported by