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University of Groningen

Deacetylase inhibitors & Histone inheritance

Zwinderman, Martijn R. H.

DOI:

10.33612/diss.167867692

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from

it. Please check the document version below.

Document Version

Publisher's PDF, also known as Version of record

Publication date:

2021

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Zwinderman, M. R. H. (2021). Deacetylase inhibitors & Histone inheritance. University of Groningen.

https://doi.org/10.33612/diss.167867692

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Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum.

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Deacetylase inhibitors

&

Histone inheritance

PhD thesis

to obtain the degree of PhD at the

University of Groningen

on the authority of the

Rector Magnificus Prof. C. Wijmenga

and in accordance with

the decision by the College of Deans.

This thesis will be defended in public on

Friday 9 April 2021 at 16.15 hours

by

Reint Harm Zwinderman

born on 17 November 1990

in Winschoten, The Netherlands

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Supervisors

Prof. F. J. Dekker Prof. H. J. Haisma

Assessment committee

Prof. R. Gosens Prof. C. Ottmann Prof. J. J. Schuringa

The work described in this thesis was carried out at the Groningen Research Institute of Pharmacy, University of Groningen, The Netherlands.

Cover by Martijn Zwinderman featuring James Watson and Francis Crick. Printed by Gildeprint, Enschede, The Netherlands.

© 2021, Martijn Zwinderman.

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“Ik heb het nog nooit gedaan, dus ik denk dat ik het wel kan.”

Pippi Langkous

“I have never tried that before, so I think I should definitely be able to do

that.”

Pippi Longstocking

2

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Contents

Chapter 1

Introduction

6

Deacetylase inhibitors

Chapter 2

Acetylation and methylation in asthma, COPD, and lung

cancer

18

Chapter 3

Targeting HDAC complexes in asthma and COPD

58

Chapter 4

Effect of Class I selective HDAC inhibitors with an

o-aminobenzamide substituted thiophene scaffold on

inflammatory gene expression in macrophages

82

Histone inheritance

Chapter 5

Bioorthogonal metabolic labeling

132

Chapter 6

Inversion of asymmetric histone deposition upon

replication stress

148

Chapter 7

Summary and future perspectives

190

Appendices

Nederlandse samenvatting

Publications

Posters

Acknowledgements

Curriculum Vitae

198

201

204

206

210

4

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