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University of Groningen

Integrating an ex vivo model into fibrosis research Gore, Emilia

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below.

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Publisher's PDF, also known as Version of record

Publication date: 2019

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Gore, E. (2019). Integrating an ex vivo model into fibrosis research. University of Groningen.

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Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum.

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Integrating an ex vivo model

into fibrosis research

Emilia Gore

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The research presented in this thesis was financially supported by ZonMW (The Netherlands Organization for Health Research and Development), grant number 114025003.

The work presented in this thesis was conducted at the Greningen Research Institute of Pharmacy, department of Pharmaceutical Technology and Biopharmacy, University of Groningen, The Netherlands, at the Institute of Translational Immunoly, Johannes Gutenberg University Mainz,Germany amd at Boehringer Ingelheim Pharma GmbH & Co. KG, Germany. For this project we colaborated with the Univeristy Medical Center Groningen, The Netherlands.

Printing of this thesis was supported by the University of Groningen, Faculty of Science and Engineering and the University of Groningen Library

Cover and layout design: Emilia Gore Printed by: Ipskamp Printing, Enschede

ISBN (printed version): 978-94-034-1828-5 ISBN (digital version): 978-94-034-1827-8

©Emilia Gore, 2019

No parts of this thesis may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording or any information storage and retrieval system, without the prior permission of the author.

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Integrating an ex vivo model

into fibrosis research

PhD thesis

to obtain the degree of PhD at the University of Groningen

on the authority of the Rector Magnificus prof. E. Sterken

and in accordance with the decision by the College of Deans. This thesis will be defended in public on

Friday 12 July 2019 at 14.30 hours

by

Emilia Gore

born on 24 August 1987

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Supervisor

Prof. P. Olinga

Co-supervisor

Dr. M. Boersema

Assessment Committee

Prof. R.A. Bank Prof. M.C. Harmsen Prof. W. Jiménez

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Paranimphs

Emilia Bigaeva

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CONTENTS

1

Introduction 10

2

Next generation sequencing reveals in-depth features of 22

murine and human precision-cut tissue slices

3

Ex vivo human fibrosis model: characterization of healthy 64

and diseased precision-cut tissue slices by next generation sequencing

4

Investigating fibrosis and inflammation in an ex vivo 102

NAFLD murine model

5

PI3K inhibition reduces murine and human liver 138

fibrogenesis in precision-cut liver slices

6

Thorough evaluation of the liver expression of GPNMB 168

(Glycoprotein Nonmetastatic Melanoma Protein B) in

murine and human liver diseases using precision-cut liver slices

7

General discussion and perspectives 192

8

Summary 210

9

Appendices 218

Abbreviations Author affiliation

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1

Introduction 10

2

Next generation sequencing reveals in-depth features of 22

murine and human precision-cut tissue slices

3

Ex vivo human fibrosis model: characterization of healthy 64

and diseased precision-cut tissue slices by next generation sequencing

4

Investigating fibrosis and inflammation in an ex vivo 102

NAFLD murine model

5

PI3K inhibition reduces murine and human liver 138

fibrogenesis in precision-cut liver slices

6

Thorough evaluation of the liver expression of GPNMB 168

(Glycoprotein Nonmetastatic Melanoma Protein B) in

murine and human liver diseases using precision-cut liver slices

7

General discussion and perspectives 192

8

Summary 210

9

Appendices 218

Abbreviations Author affiliation

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