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Molecular dissection of Cdc6 and the miR-148 family : two stories with common themes

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(1)Molecular dissection of Cdc6 and the miR-148 family : two stories with common themes Duursma, A.M.. Citation Duursma, A. M. (2008, May 14). Molecular dissection of Cdc6 and the miR-148 family : two stories with common themes. Retrieved from https://hdl.handle.net/1887/12848 Version:. Corrected Publisher’s Version. License:. Licence agreement concerning inclusion of doctoral thesis in the Institutional Repository of the University of Leiden. Downloaded from:. https://hdl.handle.net/1887/12848. Note: To cite this publication please use the final published version (if applicable)..

(2) Chapter 6. miR-152 plays a role in S-phase and G2/M-phase cell cycle progression of diploid fibroblasts B>5' IIFGA5$C57<=A)I890F=9@=B?,9IJ9B;5A=. .

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(4) miR-152 plays a role in S-phase and G2/M-phase cell cycle progression of diploid fibroblasts B>5' IIFGA5$C57<=A)I890F=9@=B?,9IJ9B;5A= .<9(9H<9F@5B8G5B79F#BGH=HIH9*@9GA5B@55B  

(5) 2AGH9F85A.<9(9H<9F@5B8G Eukaryotic cells have evolved several mechanisms to ensure proper proliferation. Upon detection of aberrant replication or DNA damage, cells activate an intra-S phase or a G2 phase checkpoint, which arrest cells to allow for repair and to prevent entry into mitosis. MicroRNAs (miRNAs) are small RNA molecules of approximately 22 nucleotides that bind to target mRNAs and inhibit translation. miRNAs have been implicated in many cellular processes, but only a few miRNAs have been shown to be involved in cell cycle regulation. In this study we aimed to study the role of miR-152 in diploid BJ ET fibroblasts by using antagomirs, which inhibit miRNA function. Interestingly, we observed that inhibition of miR-152 resulted in an increase of the relative percentage of S-phase and G2/M–phase cells. More detailed analysis revealed that these cells arrested in G2-phase. Together these results suggest that endogenous expression of miR-152 is required for proper cell cycle progression.. Introduction I?5FMCH=7 79@@G <5J9 9JC@J98 G9J9F5@ A97<5B=GAGHC9BGIF9DFCD9F(F9D@=75H=CB 5B8HCDF9J9BH;9BCA=7=BGH56=@=HM5B875B79F   7FI7=5@ FC@9 =G D@5M98 6M 7<97?DC=BHG H<5H 89@5M79@@7M7@9DFC;F9GG=CB=BH<9DF9G9B79 C: 85A5;98 ( (M69F; 9H 5@  

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(48) A=, D@5MG5FC@9=B- D<5G95B8! ' D<5G9. A. B Relative Dnmt1 3'UTR Luciferase activity. Relative Luciferase activity. 1,20 1,00 0,80 0,60 0,40 0,20 0,00 pGL3. Dnmt1 wt. 2,5. 2. 1,5. 1. 0,5. 0. Dnmt1 mut. Scramble. AntagomiR-152. Figure 2. AntagomiR-152 inhibits miR-152 activity towards a Luciferase-Dnmt1-3’UTR. A A=,  F9DF9GG9G D!& &I79LDF9GG=CBK=H<H<9K=@8 HMD9BAH U/.,BAH KH6IHBCH5AIH5BHK=H<5AIH5H98A=, H5F;9HG=H9 BAH AIH LDF9GG=CBK5G75@7I@5H98F9@5H=J9HC57C HF5BG:97H=CBK=H<57CBHFC@A=,( B BH5;CA=, F9DF9GG9G A=, A98=5H98F9;I@5H=CBC:BAH 9@@GHF5BG:97H98K=H<A=, 5B8BAH K9F9HF95H98K=H<BH5;CA=, CF 5-7F5A6@987CBHFC@ FFCF65FGF9DF9G9BHGH5B85F889J=5H=CB. HC=B<=6=HA=, 57H=J=HM  #BH9F9GH=B;@M K9 BCH98 5 897F95G9 =B 79@@ DFC@=:9F5H=CBIDCB58A=B=GH9F=B;5BH5;CA=,  HC $ . 79@@G  .C EI5BH=:M H<=G 9::97H K9 G99898 79@@G =B 9EI5@ 5ACIBHG 5B8 HF95H98 H<9A K=H< 9=H<9F 5BH5;CA=,  CF 5 G7F5A6@9 7CBHFC@ 5B8 7CIBH98 79@@G CB 85MG

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(51) <5DH9F. Total cell number / 1000. A 300 250 200. Scramble AntagomiR-152. 150 100 50 0 0. 1. 2. 3. 4. 5. days. B Scramble. AntagomiR-152. 500. 500. G1 S G2/M. 300. 400. 85% 5% 10%. Counts. Counts. 400. 200 100. G1 S G2/M. 300. 48% 15% 37%. 200 100. 0. 0 0. 200. 400. 600. 0. 200. PI. 400. 600. PI. C AntagomiR-152 104. 103. 103. 102. M. 101. 41%. G2 13%. 100. MPM-2. MPM-2. Scramble 104. 102. M. 101. 17%. G2 33%. 100 0. 200. 400. PI. 600. 0. 200. 400. 600. PI. Figure 3. Inhibition of endogenous miR-152 in BJ ET diploid fibroblasts results in a G2 arrest. A #B<=6=H=CB C:A=, 6MBH5;CA=, F9GI@HG=BF98I798DFC@=:9F5H=CB $.79@@GK9F9G998985B87CIBH98CB85M

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(55) 9@@GK9F9F9@95G98 =BH<9DF9G9B79C:5BH5;CA=,GIDCB588=H=CB C:G9FIA5B8<5FJ9GH98  5B8 <CIFG @5H9F  9@@G K9F9 @569@@98 K=H< *# 5B8 79@@ 7M7@98=GHF=6IH=CBK5G5B5@MN98 G89D=7H98 =B =;IF9BCG=;B=75BH7<5B;9=B- D<5G9 9BHFM K5G C6G9FJ98 89ACBGHF5H=B; H<5H A=, =GBCH=BJC@J98=B! -HF5BG=H=CB . Relative % of cell in S-phase. A=, D@5MG5FC@9=B- D<5G95B8! ' D<5G9. 18 16 14 12 10 8 6 4 2 0. Scramble AntagomiR-152. t=12. t=16. t=21. Figure 4. Inhibition of endogenous miR-152 does not result in increased S-phase entry.$.79@@GK9F9 GMB7<FCB=N986MG9FIAGH5FJ5H=CB=B!

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(60)  .<=GGHI8M5@GCF9J95@987CBG=89F56@M A=,  9LDF9GG=CB =B H=GGI9G :FCA H<9 .<MFC=8 /H9FIG *FCGH5H9 5B8 D=8=8MA=G 5B8 /BF9GHF=7H98 -CA5H=7 -H9A 79@@G  (CH56@M H<=G =B8=75H9G H<5H A=,  =G CB@M 9LDF9GG98 =B 5 A=BCF=HM C: H<9 HCH5@ C: 

(61)  H=GGI9G5B8HIACIFG5AD@9GG7F99B98=BH<=G GHI8M .<9F9:CF9A=, 9LDF9GG=CBA=;<H 69F9GHF=7H98HC79FH5=B79@@HMD9G5B8H<9F9=H A=;<H<5J95GD97=5@=G98:IB7H=CB  .C GHI8M H<9 FC@9 C: A=,  =B $ . 6FC6@5GH K9 =B<=6=H98 =HG :IB7H=CB 6M 5BH=G9BG9 5BH5;CA=FG  BH5;CA=FG K9F9 DF9J=CIG@MG<CKBHC69<=;<@MGD97=75B8HC :IB7H=CB6CH<=BJ=JC5B8=BJ=HFC=B=B<=6=H=B; A=,(G %FIHN:9@8H 9H 5@  

(62)

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(64)

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(66)

(67)   19 89ACBGHF5H98 :IB7H=CB5@=HM C: CIF 89G=;B98. 5BH5;CA=, 6MG<CK=B;F9@=9:C:A=,  A98=5H98F9DF9GG=CB=B5@I7=:9F5G9F9DCFH9F 5GG5M  #BH9F9GH=B;@M K9 BCH=798 H<5H @CB; H9FA =B<=6=H=CB C: A=,  F9GI@H98 =B 897F95G98 79@@ DFC@=:9F5H=CB 5B8 9J9BHI5@@M =B F98I798 BIA69F C: 79@@G =B8=75H=J9 C: 79@@ 895H<  =;IF9   9@@ 7M7@9 DFC@9 5B5@MG=G F9J95@98 5 A5>CF =B7F95G9 =B H<9 BIA69F C:79@@G=B- D<5G95B8! ' D<5G9 =;IF9   'CF9 GD97=7 5B5@MG=G G<CK98 5 7@95F =B7F95G9 C: 79@@G =B ! D<5G9 GI;;9GH=B; H<5HH<9G979@@G5F9=B!5FF9GH  .<9 ! 5FF9GH DF9J9BHG 79@@G K=H< 85A5;98 (CFK=H<(H<5H=GBCH:I@@MF9D@=75H98 :FCA 9BH9F=B; A=HCG=G &C6F=7< 5B8 $9;;C 

(68)

(69)  -=B79K9C6G9FJ985B=B7F95G9=BH<9 D9F79BH5;9 C: 79@@G =B - D<5G9 H<=G 7CI@8 A95BH<5HH<9C6G9FJ98!5FF9GHK5G8I9 HC DFC6@9AG 8IF=B; - D<5G9  @H9FB5H=J9@M H<9 =B7F95G98 BIA69F C: - D<5G9 7CI@8 69 5 F9GI@H C: =B7F95G98 DFC@=:9F5H=CB  .C 8=GH=B;I=G<69HK99BH<9G9DCGG=6=@=H=9G79@@G K9F9GMB7<FCB=N98=B!

(70) 6MG9FIAGH5FJ5H=CB 5B8F9@95G98=BH<9DF9G9B79C:57CBHFC@CF A=, 5BH5;CA=F (C8=::9F9B79=B?=B9H=7G C: - D<5G9 9BHFM K5G C6G9FJ98 GI;;9GH=B; H<5H H<9 F9@5H=J9 =B7F95G9 =B - D<5G9 79@@G =G ACGH @=?9@M BCH 8I9 HC ACF9 F9D@=75H=B; 79@@G  .<9 =B7F95G9 F5H<9F F997HG 5 G@CK 8CKB C: F9D@=75H=CB =B H<9 56G9B79 C: A=, CF5B- D<5G95FF9GH 7H=J5H=CBC:H<9. .

(71) <5DH9F. =BHF5 - D<5G9 7<97?DC=BH DF9J9BHG F=B; C: @5H9F9D@=75H=B;F9D@=75H=CBCF=;=BGH<9F9:CF9 5FF9GH=B; 79@@G =B 95F@M - D<5G9 5FH9? 9H 5@  

(72)

(73)    .<9 C6G9FJ98 =B7F95G9 =B - D<5G95DD95FGHC69DF98CA=B5BH=B@5H9- D<5G9 =;IF9=AD@M=B;H<5H=H=GBCHH<9 =BHF5 - D<5G9 7<97?DC=BH H<5H =G 57H=J5H98  .C;9H<9FH<9G985H57CI@8=B8=75H9H<5H( 85A5;9 577IAI@5H9G 8IF=B; - D<5G9 5B8 H<5H79@@GG@CK8CKB9B8- D<5G95B85FF9GH =B!HCDF9J9BH9BHFMC:A=HCG=G "CK9J9F 5BCH<9F DCGG=6=@=HM =G H<5H 79@@G 577IAI@5H9 8I9 HC 569FF5BH 57H=J5H=CB C: 7<97?DC=BH DFCH9=BGCF8I9HC@57?C:579@@7M7@9DFCH9=B H<5H=G9GG9BH=5@:CFDFC;F9GG=CBHCA=HCG=G  .C7@5F=:MH<9:IB7H=CBC:A=, =B- D<5G9 5B8!DFC;F9GG=CB=H=GC6@=;5HCFMHC=89BH=:M H<9H5F;9HGH<5H5F9=BJC@J98 19DF9J=CIG@M =89BH=98BAH6BAH 5B8'&&5GA=,  H5F;9HG  #B57H=J5H=CB C: BAH  K5G G<CKB HC F9GI@H =B A=HCH=7 75H5GHFCD<9 =B <IA5B 75B79F 79@@G <9B 9H 5@  

(74)

(75)   #B :IHIF9 =H KCI@8 H<9F9:CF9 69 =BH9F9GH=B; HC 89H9FA=B9 K<9H<9F =B7F95G98 9LDF9GG=CB C: BAH CFCIFCH<9F=89BH=98H5F;9HG<5J9 5B9::97HCB! D<5G9DFC;F9GG=CB . 

(76) ;C:;@M7C;9BK5GIG98:CFDF97=D=H5H=CB .<9A=F05B5 E,. *,A=,(89H97H=CB?=HA6=CBK5GIG98HC89H97H A=,( 9LDF9GG=CB 6M EI5BH=H5H=J9 ,. *,  -D97=7 A=, 5B8/,.5B8*,DF=A9FGK9F9IG98A6=CB5B8 B;C:,(K5GIG98D9FF957H=CB ,95@ H=A9,. *,K5G D9F:CFA98IG=B;H<9'=B=)DH=7CB-MGH9A=C ,58  Luciferase assays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

(77) B;C: H<9=B8=75H98D!&&I7=:9F5G97CBGHFI7H5B8

(78)

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(80) . Cell culture and antagomiRs. (* 

(81)  

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(87) :9H5@6CJ=B9. <5FJ9GH985B8L98=B=79 7C@89H<5BC@)( (9LH79@@GK9F9. G9FIA 5B8 F9@95G98 =B H<9 BCFA5@ A98=IA  $ . 79@@G. 6@C7?98 K=H< *-

(88)

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isolation and quantitative RT-PCR ,( K5G =GC@5H98 :FCA 79@@G IG=B; .F=NC@ #BJ=HFC;9B 5B8. . @CK 7MHFCA9HF=7.

(90) A=, D@5MG5FC@9=B- D<5G95B8! ' D<5G9. References. 

(91)

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(95)

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(98)

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(100)

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(105)

(106)

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(108)

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(110)

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(112)

(113)

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(115)

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(117)

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(119) . 5B8F9D@=75H=CB7<97?DC=BHG BBI,9J!9B9H  . %FIHN:9@8H $  %IK5>=A5 -  F5=7< ,  ,5>99J %  ! . )UCBB9@@ '  $  5B8 =ADF=7< %    

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(122)

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(124)

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(126)

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(128)

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(130) . Acknowledgements 19 KCI@8 @=?9 HC H<5B? '5FH=>B %9889 5B8 $CGM5BB9 J5B I=>G9 :CF A5BM <9@D:I@ 8=G7IGG=CBG.  . @9 -5;9   (5;9@ ,  ;5B     -7<F=9F '  '9GA5B  '5B;=C@5 B=@9 '5=F5! '9F75H9@@=( =5:F9 -    9H 5@  

(131)

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(134)

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(136) . &@5J9   2=9 4  %5GG7<5I %    5B8 5FF=B;HCB $   . .

(137)

(138)

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