Shigella spp. and entero-invasive Escherichia coli van den Beld, Maaike
Hele tekst
GERELATEERDE DOCUMENTEN
The work presented in this thesis was performed at and funded by the Centre for Infectious Disease research, diagnostics and laboratory Surveillance (IDS) of the National Institute
Lan, R., et al., Molecular evolution of large virulence plasmid in Shigella clones and enteroinvasive Escherichia coli.. Hale, T.L., Genetic basis of virulence in
It consists of a 16S rRNA gene analysis first, if similarity between isolates is equal or above the species threshold of 98.7%, whole genome analyses Average Nucleotide Identity
Material and Methods Evaluation of culture dependent diagnostic methods Two digital surveys, which comprised questions about the culture-dependent and molecular methods used to
All isolates except for one EIEC strain (97%) were identified in concordance with the original identification, or had an inconclusive result of which one of the results was
Figure 1 The classes in the different discrimination levels to which isolates were assigned Table 1 Continued Pathotype Genus Group Species ▪ Shigella ▪ Escherichia
flexneri isolate was obtained or detected in the fecal samples were used in the comparison of culture- positive cases with culture-negative cases.. flexneri and one EIEC isolate
Moleculaire screening op virulentiegenen en andere genetische (fylogenetische) markers die geassocieerd zijn met klinische humane isolaten maakt “risk-based” onderzoek