The sponge as a hypothesis pump
Chaib De Mares, Maryam
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Publication date:
2018
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Chaib De Mares, M. (2018). The sponge as a hypothesis pump: A multi-omics overview of a
sponge-microbe symbiosis. University of Groningen.
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Three-domain microbial communities in Aplysina and Dysidea sponges
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Sample Name Abbrev. Sponge genus No. of bacterial reads No. of archaea l reads No. of fungal reads (ITS2) Total no. of microeukary a reads No. of microeukary a reads not Porifera
bacterial reads archaeal reads fungal reads microeukarya reads
Observe d OTUs Expected OTUs (Chao1)a Observe d OTUs Expecte d OTUs (Chao1)a Observe d OTUs Expecte d OTUs (Chao1)a Observe d OTUs Expecte d OTUs (Chao1)a Mediterranean Sea
A. aerophoba 1 Aa1 Aplysina 34209 178947 7
27921
0 395294 2173 1197
12425 ±
227 213 264 ± 23 135 242 ± 40 70 100 ± 16
A. aerophoba 2 Aa2 Aplysina 41947 122609 2
35217
2 402403 3106 1302
12621 ±
160 160 207 ± 30 167 237 ± 24 53 91 ± 22
A. aerophoba 3 Aa3 Aplysina 37018 263371 7
33421
6 447478 7626 1226
12939 ±
225 219 248 ± 12 112 158 ± 20 70 101 ± 18
D. avara 1 Da1 Dysidea 46412 201717 2
20691
4 447676 5376 681 3397 ± 69 349 373 ± 11 193 292 ± 31 91 107 ± 9
D. avara 2 Da2 Dysidea 31315 206856 0
18129
5 436855 88166 876 4386 ± 114 235 263 ± 11 244 358 ± 32 100 118 ± 10
D. avara 3 Da3 Dysidea 28120 201045 8 14230 2 464741 9693 1208 4032 ± 63 192 205 ± 7 27 49 ± 17 107 130 ± 13 Seawater Mediterranean 1 SWM1 116282 262589 8 22426 1 535350 499579 719 14548 ± 225 394 401 ± 6 328 515 ± 48 159 159 ± 0 Seawater Mediterranean 2 SWM2 108192 284530 0 30822 7 469621 466658 707 14029 ± 235 390 399 ± 7 393 575 ± 41 158 168 ± 10 Seawater Mediterranean 3 SWM3 130946 309760 8 20097 5 471441 465064 745 14543 ± 192 399 407 ± 6 338 491 ± 36 159 159 ± 1
Caribbean Sea
A. cauliformis 1 Ac1 Aplysina 318385 14984 56727
8 1196853 83779 1147
14942 ±
232 238 255 ± 6 103 138 ± 15 25 31 ± 7
A. cauliformis 2 Ac2 Aplysina 385282 18047 50756
7 835488 417744 1226
15639 ±
231 367 374 ± 3 87 178 ± 42 27 27 ± 0
A. cauliformis 3 Ac3 Aplysina 149375
0 249426 9971 149481 8969 781
17258 ±
109 370 452 ± 23 72 126 ± 28 86 104 ± 13
D. etheria 1 De1 Dysidea 8450 84252 16081
8 155462 137611 837 1980 ± 90 292 309 ± 9 77 146 ± 29 49 55 ± 5
D. etheria 2 De2 Dysidea 93116 5677 22966
6 123956 44040 832 4031 ± 18 268 3 ± 2 77 114 ± 16 65 73 ± 6
D. etheria 3 De3 Dysidea 15176 45848 19212
7 131040 13050 866 2056 ± 87 2 305 ± 17 100 223 ± 48 62 73 ± 6 Seawater Caribbean 1 SWC1 0 230048 2 196 350760 334212 542 598 ± 19 16 26 ± 11 66 77 ± 10 Seawater Caribbean 2 SWC2 0 185125 9 10197 8 252887 252868 443 501 ± 19 222 378 ± 43 30 31 ± 1 Seawater Caribbean 3 SWC3 0 229458 3 15629 284003 274362 563 632 ± 22 62 147 ± 44 70 73 ± 3
