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University of Groningen Applications of functional dyes in biomedicine and life sciences Huang, Jingyi

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University of Groningen

Applications of functional dyes in biomedicine and life sciences

Huang, Jingyi

DOI:

10.33612/diss.123828369

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below.

Document Version

Publisher's PDF, also known as Version of record

Publication date: 2020

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Huang, J. (2020). Applications of functional dyes in biomedicine and life sciences. University of Groningen. https://doi.org/10.33612/diss.123828369

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Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum.

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Applications of Functional Dyes in

Biomedicine and Life Sciences

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Applications of Functional Dye in Biomedical and Life Sciences

Jingyi Huang PhD thesis

University of Groningen

Zernike Institute PhD thesis series 2020-12 ISSN: 1570-1530

ISBN: 978-94-034-2686-0 (printed version) ISBN: 978-94-034-2687-7 (electronic version)

The research described in thesis was performed in Polymer Chemistry and Bioengineering group at Zernike Institute for Advanced Materials, University of Groningen, the Netherlands. This work was financially supported by Chinese Scholarship Council (CSC), University of Groningen and Netherlands Organization for Science Research (NWO).

Cover design by: Jingyi Huang & Shuo Yang Printed by: Proefschriftmaken

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Applications of Functional Dyes in

Biomedicine and Life Sciences

PhD thesis

to obtain the degree of PhD at the University of Groningen

on the authority of the Rector Magnificus Prof. E. Sterken

and in accordance with the decision by the College of Deans. This thesis will be defended in public

on

Friday 8 May 2020 at 11.00 hours by

Jingyi Huang

born on 21 July 1986 in Hebei, China

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Supervisor

Prof. dr. Andreas Herrmann

Assessment committee

Prof. dr. Johan Hofkens Prof. dr. Christoph Arenz Prof. dr. Antoine van Oijen

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Dedicated to my beloved husband Shuo Yang

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Contents

Chapter 1 Desigen of Functional Dyes for Advanced Microscopy

and Life-sciences ...

1

1.1 Introduction ... 2

1.2 Organic fluorophores for super-resolution microscopy ... 2

1.3 Photoswitches for photocontrolled biomolecules ... 19

1.4 Thesis Motivation and Overview ... 29

Chapter 2 A Simple and Versatile Design Concept for

Fluorophore-derivatives with Intramolecular Photostabilization

...

39

2.1 Introduction ... 40

2.2 Result and Discussion ... 42

2.3 Conclusion ... 54

2.4 Experimental Section ... 55

Chapter 3 Photostabilizer-Rhodamine Conjugates for

Biomolecules Labelling and STED Microscopy ...

73

3.1 Introduction ... 74

3.2 Result and Discussion ... 76

3.3 Conclusion ... 84

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Chapter 4 Overcoming Bacterial Resistant by Photo-switchable

Antibiotic ...

101

4.1 Introduction ... 102

4.2 Result and Discussion ... 103

4.3 Conclusion ... 110

4.4 Experimental Section ... 111

C

hapter 5 Light-regulated RNA–small Molecule Interactions ..

126

5.1 Introduction ... 127

5.2 Result and Discussion ... 127

5.3 Conclusion ... 137

5.4 Experimental Section ... 138

C

hapter 6 Outlook and Future Perspectives ...

145

Summary ...

150

Samenvatting

... 154

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