The handle http://hdl.handle.net/1887/84689 holds various files of this Leiden University dissertation.
Author: Zwan, A. van der
Title: The immune compartment at the maternal-fetal interface throughout human pregnancy
Issue Date: 2020-02-06
at the maternal-fetal interface throughout human pregnancy
Anita van der Zwan
All rights reserved. No part of this thesis may be reproduced or transmitted in any form, by any means, electronic or mechanical without prior permission of the author, or where appropriate, of the publisher of the articles.
The research presented in this thesis was performed at:
The Department of Stem Cell and Regenerative Biology at Harvard University and the Department of Immunohematology and Blood Transfusion at Leiden University Medical Center.
Financial support for the research conducted at Harvard University was kindly provided by: VSBfonds and Studiefonds Ketel1.
Financial support for the publication of this thesis was kindly provided by:
Stichting Oranjekliniek, National Reference Center for Histocompatibility Testing, GenDx, Fluidigm, CleanAir by Baker, U-CyTech Biosciences, ChipSoft, ABN AMRO, and Pfizer.
Cover design and layout by: Nicolene van der Zwan Printed by: GVO drukkers & vormgevers B.V.
ISBN: 978-94-6332-603-2
at the maternal-fetal interface throughout human pregnancy
Anita van der Zwan Proefschrift
ter verkrijging van de graad van Doctor aan de Universiteit Leiden,
op gezag van Rector Magnificus prof. mr. C.J.J.M. Stolker, volgens besluit van het College voor Promoties
te verdedigen op donderdag 6 februari 2020, klokke 11.15 uur
door
geboren te Pretoria, Zuid Afrika
in 1988
Co-promotoren: Dr. S. Heidt
Dr. T. Tilburgs (Cincinnati Children’s Hospital, USA)
Leden promotiecommissie: Prof. Dr. J. Borst Prof. Dr. C. van Kooten
Prof. Dr. A. Moffett (University of Cambridge, UK)
Prof. Dr. S. Saito (University of Toyama, Japan)
The answers we have found have only served to raise a whole set of new questions.
In some ways we feel that we are as confused as ever, but we think we are confused on a higher level, and about more important things.”
Earl C. Kelley
The Workshop Way of Learning (1951)
Mass cytometry quality control: a crucial step not to be neglected
General introduction 9
61
91
117
133
145
183
Three types of functional regulatory T cells control 29
T cell responses at the human maternal-fetal interface
Mixed signature of activation and dysfunction allows human decidual CD8
+T cells to provide both tolerance and immunity
Cross-reactivity of virus-specific CD8
+T cells against allogeneic HLA-C: possible implications for pregnancy outcome
Cytotoxic potential of decidual NK cells and CD8
+T cells awakened by infections
Visualizing dynamic changes at the maternal-fetal interface throughout human pregnancy by mass cytometry
Summarising discussion
01
03 04 05 06 07 08 02
09 English summary
Nederlandse samenvatting List of publications About the author
203
General introduction
Chapter 01
01
General introduction
1. The human immune system
The human immune system is shaped by cell populations, known as white blood cells or leukocytes, that are dedicated to protecting their host against tumor cells and micro- organisms, such as viruses, bacteria and parasites. Cells from the immune system originate from hematopoietic stem cells in the bone marrow, which after development circulate in the blood or undergo further education in the thymus, followed by migration to other (lymphoid) tissues. Traditionally, the immune system is divided into the innate and adaptive immune compartment, though several cell types (i.e. dendritic cells, TCRγγ γδ T cells and NKT cells) form a link between these two arms of the immune system (1, 2). To function properly, immune cells must distinguish between ‘self’ (one’s own healthy cells) and ‘non-self’ antigens such as tumor cells and pathogens. Immune tolerance towards self-antigens is established early in life where most cells reactive against self-antigens (autoreactive cells) are deleted to prevent autoimmunity. Upon breaching physical barriers such as the skin and mucosal surfaces, the first line of defense a pathogen encounters is the innate immune response that relies on several recognition mechanisms. This response involves soluble proteins (cytokines, chemokines), the complement system, and cells of both the myeloid lineage, such as macrophages, dendritic cells (DC), neutrophils and eosinophils, and the lymphoid lineage, including natural killer (NK) cells and innate lymphoid cells (ILCs). The innate immune system mounts a rapid and non-specific immune response against pathogens.
Infections that manage to surpass or outnumber innate immunity, encounter cells of the adaptive immune system that are more specific and consist of B and T lymphocytes, the latter including CD8+ and CD4+ T cells. B and T lymphocytes express somatically rearranged receptors that have specificity for the antigens they bind. The adaptive immune arm provides long-term immunological memory that allows stronger and faster immune responses upon re-encounter with the same pathogen. This immunological memory forms the basis for effective vaccination.
Crosstalk between the innate and adaptive immune compartment mediates an effective immune response (3) (Fig. 1). Processed peptides of an antigen are presented by antigen-presenting cells (APC), such as macrophages, dendritic cells and B cells, in their major histocompatibility complex (MHC) molecules to T cells. B cells recognize and internalize intact pathogens with their B cell receptors (BCR), after which they produce immuno-globulins (antibodies) and present antigen to CD4+ T cells to activate them.
Subsequently, T cells, that can be subdivided into effector helper T cells, cytotoxic T cells
and regulatory T cells, recognize these processed peptides bound to MHC molecules
with their T cell receptor (TCR). CD4+ T cells recognize peptides in the context of MHC
class II, hereby providing help to cytotoxic T cells and B cells, while CD8+ T cells can
recognize peptide-MHC class I resulting in an effector response that includes the generation
of long-live memory cells (4) (Fig. 2A).
2. HLA and alloreactive-immune responses
Whether a response is elicited by the immune compartment depends on the recognition of ‘self’ and ‘non-self’. MHC genes are essential for this recognition and encode for MHC class I and II molecules. MHC class I molecules are expressed by all nucleated cells and platelets, and present peptides derived from intracellular pathogens. MHC class II molecules are expressed by APC, activated T cells, and activated endothelial cells, and present self and non-self peptides that appear in the extracellular milieu. In humans, MHC molecules are known as human leukocyte antigens (HLA) that are located on the short arm of chromosome 6. HLA class I consists of the polymorphic HLA-A, -B, and -C and the non-polymorphic HLA-E, -F, and -G molecules. HLA class II is divided into the three major HLA-DR, -DQ, and -DP antigens (5). Every individual inherits one allele from their mother and one allele from their father, making a fetus semi-allogeneic to the immune system of the mother. There are numerous genetic variants, polymorphisms, of HLA molecules in human populations. These polymorphisms ensure that a population does not succumb to new pathogens or mutated pathogens, because several individuals in the population will be able to mount an immune response to these pathogens. Essentially, the function of HLA molecules is to present peptide fragments derived from pathogens to the TCR expressed on T cells. Here, T cells are activated by non-self antigens presented in self
Figure 1. A simplistic overview of the main players in an immune response.
During an immune response, pathogens (viruses, bacteria, parasites) can be taken up by antigen-presenting cells (e.g. dendritic cells and macrophages) and presented to specific T cells. CD8+ T cells become activated cytotoxic T cells (CTL) that secrete pro-inflammatory cytokines and cytotoxic molecules, such as perforin and granzymes.
CD4+ T cells differentiate into several T helper (Th) cell subsets (e.g. Th1, Th2, Th17, and Treg cells) depending on the presence of certain cytokines. B cells can activate CD4+ T cells that subsequently provide help to B cells.
Antigen-presenting cells also play an important role in controlling ILC homeostasis and function.
Macrophage Dendritic cell
B cell CD4+ T cell CD8+ T cell
Innate lymphoid cell
Treg Virus Bacteria Parasite
CD8+ T cell (CTL)
Granzymes Perforin Cytokines
Th1 cell Th2 cell Th17 cell
01
HLA. Conversely, T cells can also get activated by the presence and recognition of non- self (allogeneic) HLA molecules as is the case in transplantation, blood transfusions and pregnancy. When a donor and recipient have different HLA molecules, the recipient’s immune system mounts a response against the HLA molecules of the donor as the graft expressing these donor molecules is perceived as ‘foreign’. This response against the donor is referred to as an allo-immune response. Alloreactivity of T cells comes in two flavors: direct and indirect allorecognition. In direct allorecognition, recipient T cells recognize allogeneic (donor) peptide/MHC complexes (pMHC) presented on the surface of donor cells. Indirect allorecognition involves the response of recipient T cells to processed donor MHC allo-peptides presented in the context of self MHC molecules expressed on recipient APC (6). It was this phenomenon of alloreactivity in transfusion and pregnancy that led to the initial discovery of MHC (7, 8). Immune cell allo-reactivity can also occur in an antigen-independent manner, as is the case with NK cells. NK cell inhibitory killer cell immunoglobulin-like receptors (KIR) and C-type lectins can recognize specific MHC class I molecules. However, cells that fail to express self MHC-I molecules on their cell surface are eliminated by NK cells via activating NK cell receptors, known as the missing-self hypothesis (9). Major ligands for inhibitory KIRs are HLA-C molecules, that are classified as HLA-C1 and HLA-C2 molecules based on their sequence. In a transplantation setting, when the recipient’s NK cells fail to recognize self-KIR ligands (HLA-C molecules) on the donor cells, they kill the donor cells as a result of the lack of inhibitory signals and the engagement of activating receptors (10).
3. T cell immunity
3.1 T cell development and activation
T cells are generated in the bone marrow, after which they migrate to the thymus to mature and undergo gene rearrangements followed by negative and positive selection. In the thymus, T cell precursors express a TCR that is generated by the recombination of gene segments (majority of γγ αβ T cells; minority of γγγδ T cells) and differentiate into CD4+ and CD8+ T cells when they have affinity for, and bind peptides presented in MHC class I or II.
This process is referred to as positive selection and only involves γγ αβ T cells as γγγδ T cells
seem indifferent to peptides presented by MHC molecules. T cells that bind peptide-MHC
complexes and are chosen by positive selection are subsequently subjected to negative
selection where T cells with receptors that bind too strong to self-MHC undergo cell death
(autoreactive T cells). These processes ensure that the T cells that leave the thymus
(1-2%) are tolerant to self-antigens and capable of initiating an immune response against
foreign antigens presented by self-MHC molecules. This process is imperfect, and a small
fraction of autoreactive T cells escapes negative selection and needs to be regulated in
the periphery. For this purpose, a subset of autoreactive CD4+ T cells that are not
deleted differentiate into regulatory T cells (Treg) characterized by the expression of
CD25 and FOXP3, and are equipped to maintain peripheral immune tolerance (11, 12).
These Treg are indicated as thymus-derived naturally occurring Treg (nTreg).
Mature T cells that leave the thymus are considered naïve (N) cells and recirculate between the blood and secondary lymphoid organs. Encounter with a foreign antigen triggers proliferation, clonal expansion and differentiation of these naïve T cells into effector (EFF) T cells that secrete pro-inflammatory cytokines, such as IL-2 and IFN-γ γ, and cytotoxic molecules, such as perforin and granzymes (primary immune reaction). This T cell activation requires three signals: 1) strong and specific binding of the TCR to its pMHC accompanied by the binding of the co-receptors CD4 or CD8 for additional stabilization, 2) binding of the co-stimulatory molecule CD28 on the T cell surface to CD80/CD86 on the APC surface, and 3) an additional signal provided by inflammatory cytokines to determine which type of responder the cell will become (13). CD8+ T cells become activated cytotoxic T cells, whereas CD4+ T cells differentiate into several T helper (Th) subsets, namely Th1, Th2, Th9, Th17, Tfh (follicular helper) and Treg cells depending on the presence of certain cytokines (14) (Fig. 1). Next, these effector T cells exit the lymphoid tissue to scout out the site of infection. Once the infection is cleared, the majority (90- 95%) of effector cells undergo apoptosis (cell death) with a small percentage differentiating into antigen-specific central and effector memory (CM, EM) T cells. These memory T cells have the capacity to immediately respond upon re-encounter with the same pathogen leading to a considerably shorter response time of the secondary immune reaction (15).
CM T cells express homing receptors that allow them to migrate to secondary lymphoid organs and exhibit higher proliferative capacity but slower effector function than EM T cells. EM T cells express a different set of chemokine receptors that allows them access to inflamed peripheral tissues. Apart from differentiating into fully functional T cells, CD8+
T cells can also become dysfunctional during an immune response, as is described below.
3.2 Regulatory T cells (Treg)
In an ideal immunological response, Treg play their part in making sure the effector response is regulated and does not cause any damage to the host thereby preventing autoimmune diseases and limiting chronic inflammatory diseases. In addition to the previously mentioned nTreg, Treg can also extrathymically be ‘induced’ or ‘converted’
from naïve conventional CD4+ T cells into regulatory T cells (iTreg) during inflammatory conditions in peripheral tissues (16). Induced Treg have generally been described to lack expression of FOXP3 (a marker that specifically identifies nTreg) and HELIOS, although controversy remains about whether lack of HELIOS is a defining marker for iTreg (17).
In contrast to nTreg, iTreg frequently have a restricted TCR specificity for distinct cell
types or foreign antigens. Recent studies have revealed heterogeneity within the Treg
compartment, where many different Treg subsets exist. These subsets may rely on multiple
regulatory mechanisms such as: suppression by inhibitory cytokines (IL-10, TGF-γ β),
suppression by cytolysis (granzymes), suppression by metabolic disruption and
suppression by modulating DC maturation and thereby their function to activate effector
01
T cells. A division of labor between nTreg and iTreg may be conceivable to regulate immune responses (16, 18).
3.3 Heterologous immunity
To ensure a comprehensive immune response to foreign antigens, cross-reactivity has been described as an intrinsic and essential feature of antigen recognition by T cells, where one TCR can react with approximately 10
6different MHC-associated processed peptides and thereby provide sufficient protection against different pathogens (19). Thus, CD8+
T cells confer cross-reactivity against all influenza virus strains and cross-protection has been observed for virus-specific CD8+ T cells that recognize both the hepatitis C virus and the Influenza A virus, or both the Epstein-Barr virus (EBV) and Influenza A virus, and recently protection by Dengue virus-specific CD8+ T cells against Zika virus during pregnancy in a murine infection model has emerged (20, 21, 22, 23). Aside from cross- reactivity against other viruses, a significant proportion of virus-specific CD8+ T cells in healthy (non-HLA sensitized) individuals display cross-reactivity against allogeneic HLA molecules (allo-HLA) (24, 25). This phenomenon that enables the same TCR to recognize the pMHC that was involved in its initial priming and cross-react with a different pMHC is referred to as heterologous immunity (Fig. 2B). Both naïve and memory T cells show alloreactive potential, though memory T cells pose a superior threat given that their activation threshold is significantly lower as they have less need for co-stimulation (26).
Heterologous immunity may have implications in transplantation where allo-reactive T cells are a cause of graft-versus-host disease and graft rejection (27). Furthermore, potential cross-reactivity of maternal virus-specific T cells against fetal allo-HLA may have detrimental consequences for the success of pregnancy, a subject that is discussed in more detail in Chapter 4 of this thesis.
Figure 2. MHC-TCR interactions and heterologous immunity.
(A) T cells recognize processed peptides bound to major histocompatibility complex (MHC) molecules with their T cell receptor (TCR). CD4+ T cells recognize peptides in the context of MHC class II, while CD8+ T cells recognize peptides in the context of MHC class I. (B) Heterologous immunity is the phenomenon where virus-specific CD8+
T cells can recognize the peptide-MHC complex that was involved in their initial priming (viral peptide) as well as cross-react with an allo-peptide-MHC complex presenting self-peptides.
CD4+ T cell
IFNy IFNy
CD8+ T cell
Antigen-presenting cell
TCR TCR
MHC-II MHC-I
Cross-reactive virus-specfic CD8+ T cell Virus-infected
autologous cell Allogeneic cell
viral peptide self peptide