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Cover Page

The handle http://hdl.handle.net/1887/138666 holds various files of this Leiden University dissertation.

Author: Laan, T. van der

Title: High-throughput quantification and unambiguous identification for metabolomics Issue Date: 2020-12-14

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High-throughput quantification and

unambiguous identification for

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The publication of this thesis was financially supported by: Leiden Academic Centre for Drug Research

Leiden University Libraries AB Sciex

Cover design: Anna van Duijn Thesis lay-out: Tom van der Laan Printing: Ede Printservice

© Copyright, Tom van der Laan, 2020 ISBN: 978-90-831117-2-8

All rights reserved. No part of this book may be reproduced in any form or by any means without permission of the author.

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High-throughput quantification and

unambiguous identification for

metabolomics

Proefschrift

Ter verkrijging van

de graad van Doctor aan de Universiteit Leiden,

op gezag van Rector Magnificus prof.mr. C.J.J.M. Stolker,

volgens besluit van het College voor Promoties

te verdedigen op maandag 14 december 2020

klokke 15:00 uur

door

Tom van der Laan

Geboren te Amersfoort, Nederland

in 1992

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PROMOTOR

Prof.dr. T. Hankemeier

CO-PROMOTOR

Dr.ir. A.C. Dubbelman Dr. A.C. Harms

PROMOTIECOMMISSIE

Prof.dr. H. Irth (Chair)

Prof.dr. J.A. Bouwstra (secretary) Prof.dr.ir. P.J. Schoenmakers Prof.dr. J.P.M. van Duynhoven Prof.dr. G. Hopfgartner

Prof.dr. E.C.M. de Lange

The research described in this thesis was performed at the division Systems Biomedicine and Pharmacology of the Leiden Academic Centre for Drug Research (LACDR), Leiden University (Leiden, The Netherlands). The research was financially supported by COAST/NWO (project no. 053.21.118).

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CONTENTS

Chapter 1 General introduction and scope 1

Chapter 2 Fast LC-ESI-MS/MS analysis and influence of sampling

conditions for gut metabolites in plasma and serum

21

Scientific Reports (2019)

Chapter 3 High-throughput fractionation coupled to mass spectrometry

for improved quantitation in metabolomics

45

Analytical Chemistry (2020)

Chapter 4 Data independent acquisition for the quantification and

identification of metabolites in plasma

77

Submitted for publication

Chapter 5 Fractionation platform for target identification using off-line

directed 2D-LC, MS and NMR

101

Analytica Chimica Acta (2020)

Chapter 6 Conclusions and perspectives 137

Addendum Nederlandse Samenvatting

Curriculum Vitae Acknowledgements

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