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Function and control of the ssg genes in streptomyces

Traag, B.A.

Citation

Traag, B. A. (2008, September 24). Function and control of the ssg genes in streptomyces.

Retrieved from https://hdl.handle.net/1887/13114

Version: Corrected Publisher’s Version

License: Licence agreement concerning inclusion of doctoral thesis in the Institutional Repository of the University of Leiden

Downloaded from: https://hdl.handle.net/1887/13114

Note: To cite this publication please use the final published version (if applicable).

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Function and control of the ssg genes in Streptomyces

PROEFSCHRIFT

ter verkrijging van

de graad van Doctor aan de Universiteit Leiden,

op gezag van Rector Magnificus prof. mr. P. F. van der Heijden, volgens besluit van het College voor Promoties

te verdedigen op 24 september 2008 klokke 13.45 uur

door

Bjørn Alwin Traag Geboren te Den Haag,

11 januari 1980

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Promotiecommissie:

Promotor: Prof. dr. C.W.A. Pleij Co-promotor: Dr. G.P. van Wezel Referent: Dr. B. Kraal Overige leden: Prof. dr. J. Brouwer

Prof. dr. M.H.M. Noteborn

Prof. dr. C.A.M.J.J. van den Hondel Prof. dr. S.R. Douthwaite

Printed by Ponsen & Looijen BV, Wageningen, the Netherlands

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Contents

Chapter I 5

Introduction

Chapter II 9

The SsgA-like proteins in actinomycetes: small proteins up to a big task

Chapter III 29

Transcription of the sporulation gene ssgA is activated by the IclR-type regulator SsgR in a whi-independent manner in

Streptomyces coelicolor A3(2)

Chapter IV 59

Control of Streptomyces differentiation through the regulation of SALPs

Chapter V 85

Characterization of the sporulation control protein SsgA by use of an efficient method to create and screen random mutant libraries in streptomycetes

Chapter VI 109

Functional and phylogenetic studies of the developmental cell division control protein SsgB in actinomycetes

Chapter VII

Summary and discussion 132

Nederlandse samenvatting 139

References 143

List of abbreviations 150

Appendices

Appendix A. Colour figures 152 Appendix B. The predicted structure of S. coelicolor SsgA 157

Acknowledgements 158

Curriculum vitae 159

Referenties

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(1996) Cell division gene ftsQ is required for efficient sporulation but not growth and viability in Streptomyces coelicolor A3(2).. (1985) Role of substrate mycelium in

As discussed above, SsgA activates sporulation-specific cell division with perhaps SsgC as antagonist, SsgB localises to the growing septa and is important for the cessation

License: Licence agreement concerning inclusion of doctoral thesis in the Institutional Repository of the University of Leiden Downloaded.

Streptomyces genomes are larger than those of most other bacteria; with around 7950 predicted genes (7847 encoding proteins, 18 rRNAs, 65 tRNAs and several small RNAs), the genome

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We therefore analysed the genomic sequences of all genes relating to the control of ssgA transcription, namely the specific regulator ssfR (ortholog of ssgR in S. griseus),

PCR-based site-directed mutagenesis was performed using Q5 as forward primer and reverse primers containing specific mutations (Table 2), so as to create fragments of ssgA with