Heterogeneous data analysis for annotation of microRNAs and novel genome assembly Zhang, Y.

For most of the miRNAs, functional characterization can benefit from bioinformatics by predicting miRNA target genes. In plants, miRNA target predictions have proven to

MIRNA ANNOTATION Chapter 2: Screen of MicroRNA Targets in Zebrafish Using Heterogeneous Data Sources: A Case Study for Dre-miR-10 and

The analysis after a genome has been sequenced and assembled is genome annotation, which refers to finding the protein coding genes and other functional units such as miR- NAs, and

According to the above findings and the fact that dre-miR-196 and its known target gene hoxb8a are physically close, the targets which are located within 100kb window size of

In the analysis of functionally similar miRNAs, we found that genomic distance, seed and overall sequence similarities between miRNAs are dominant features in the description of a

In this chapter, three commonly used target prediction algorithms are evaluated and further integrated using algo- rithm combination, ranking aggregation and Bayesian

In this manner, we performed a comparative genomic analysis using zebrafish resources: the zebrafish TIR containing proteins found in Ensembl were BLASTed against the carp

The mean ranking ranks the words d and c of the modal ranking as tied. This data set has not been partitioned before. With CCA the PE identifies the two cluster solution as best