Unraveling the stepwise activation mechanism of HacA, the key regulator of the unfolded protein response in Aspergillus niger
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(2) Chapter5 GeneralDiscussion.
(3) Chapter5. GeneralDiscussion ǡ Aspergillus niger Trichoderma reesei Ǥ ͶͲ Ȁ ǡ ǡ ǡ ǡ Ǥ
(4) ǡ ǡ Ǧǡ ǡ Ǥ Ͷǡ ǡ Ǥ ǡ Ǥ Ǥ
(5) A. niger,
(6)
(7) ͳ
(8) ͳǡ Ǥ
(9) Ǥ hacA Ǥ Ͷͺǡ͵ǡͳͷͶǤǡ ǡ ǡ Ǥ A. niger Ǥ CharacterisationofHacA A. niger Ǥ awamoriǡ Ǥ Ǥ͵Ͳ͵ͻ ͳǤ hacA ʹͲǡ ʹͷʹ HAC1Ǥ
(10) ǡ Ǥ HAC1u XBP1u ǡ Ǧ A.nigerhacAuǤ Ǧ ǡ 110GeneralDiscussion.
(11) Chapter5 ȋ Ǥ ͵ǡ ʹȌǡ Ǥ ǡ Ǧ hacA/hac1 ǡ Aspergilliǡ Fusarium graminearumǡMagnaporthegriseaT.reeseiȋ ǤͳȌǤ Excisedfragment. A.clavatus A.flavus A.fumigatus A.nidulans A.niger A.oryzae A.terreus F.graminearum M.grisea T.reesei . v v tcctgcagcggtgttgtg---cgacctgcagtg tcctgcagcggtgttgtg---tgacctgcagtg tcctgcagcggtgttgtg---cgacctgcagtg tcctgcagcgatgttgtg---cgacctgcagtg tcctgcagcggtgttgtg---cgacctgcagtg tcctgcagcggtgttgtg---tgacctgcagtg tcctgcagcgatgttgtg---tgacctgcagtg tcctgccgcgatgttgtc---tgacctgcagtg tcctgccgagatgttgtgcaccgacctgcagtg tcctgcagagatgttgtg---cgacccgcagtg. Figure 1. hacA/hac1 Aspergilliǡ F. graminearumǡM.griseaǡT.reeseiǤ Ǥ. ʹͲ hacA ȋ Ǥ ʹȌǤ Ǥ hacAu Ͷ͵ ǡ hacAi ͵Ͷʹ Ǥ ǡ ǡ Ǧ ǦǤ Ǧ XBP1Ǥ ʹXBP1Ǥ ǡ XBP1i XBP1u Ǥ
(12) ǡ HAC1 ǡ ͵ǯǦ Ǥ ǡ ǡ ǡ HAC1XBP1 Ǥ. GeneralDiscussion111.
(13) Chapter5 Figure 2. A. niger hacA Ǥ hacAu Ͷ͵ Ǥ ʹͲ ǡ hacAi Ǥ ʹʹʹ
(14) ͳʹͺ Ǥ
(15) ʹͲǡhacAi ͷǯǦ Ǥ. DeletionoftheA.nigerhacA hacA A. niger ǡ hacAȋ ǤͳǡͶȌǤ'hacA ǡ Ǥ
(16) ǡ hacA Ǥ A. niger 'hacA A.fumigatus 'hacAǤ ǡ A.fumigatus 'hacA ͳ͵ʹǤ A.nigerA.fumigatus. 'hacA Ǥ
(17) hacA Aspergilliǡ Ǥ ǡ 'hacA Ǥ A. fumigatus 'hacA Ǥ 112GeneralDiscussion.
(18) Chapter5 TheUPRE Ǥ Aspergillus ǡ Ǧ ȋ Ǥ͵ȌǤ Figure3. A.niger ǡ bipA, cypB, pdiA, prpA, tigAǡ hacAǤ ǡ ͶǤ. AspergilliǤ ǡ Ǧ prpAA.nigerǡA.nidulansǡA.fumigatus ȋ Ǥ ͳǡ ͵ȌǤ ȋ Ǥ ͳǡ ͵ȌǤ Ǥ ȋ ͵ǡ ͵Ȍ Ǥ cypB ȋ Ǥͷǡ ͵ȌǤǡ ǡ ȋ ͵ǡ ͵Ȍǡ cypB EǦ Ǥ hacA ǡ ͶǤ hacA A. nidulans A. fumigatus A.nigerhacAǡ ǡ ȋ Ǥ ͳǡ ͵ȌǤ Ͷ hacA/hac1 Aspergilli ǡ F. graminearum, M. grisea,T. reeseiǤ
(19) A. niger hacA Ǥ ǡ Aspergilliǡ A. niger hacA. GeneralDiscussion113.
(20) Chapter5 Ǥ ǡhacA/hac1F.graminearum,M.griseaT.reeseiǡ A.niger Ǥ UPRE1 A.clavatus A.flavus A.fumigatus A.niger A.nidulans A.oryzae A.terreus F.graminearum M.grisea T.reesei. -363 -339 -326 -360 -291 -339 -353 -419 -763 -827. 1 3 5 7 9 actgaccacgctggcctttaaa tgagaccacgttggccttttaa actgaccacgctggccttttaa tctgaccacgttggccttttaa attgaccacgctggcctttaaa tgagaccacgttggccttttaa tctgaccacgctggcctctact aactctcaacgtgtcctcaaga cccaggcaaggtttgctactac cctgtacatactgccctgtcca. -177 -154 -166 -161 -122 -154 -168 -301 -383 -469. 1 3 5 7 9 ttatgacaacgtggcctttgct tgatgacaccgtggcctctgac ttatgccaacgtggctttttct ttatgacacggtggcctgtgtt ctatgacaccgtggcctctgtc tgatgacaccgtggcctctgac gtatgacaccgtggcttctgtc agtgaacagtctgtcctttaca tcagaacagcgtgtcctctctc agaggccactctgtcctcttct. UPRE2 A.clavatus A.flavus A.fumigatus A.niger A.nidulans A.oryzae A.terreus F.graminearum M.grisea T.reesei. UPRE3. . A.clavatus A.flavus A.fumigatus Aniger A.nidulans A.oryzae A.terreus F.graminearum M.griseaȋ Ȍ T.reesei A.niger. -284 -246 -263 -259 -228 -246 -275 -377 -460 -555. 1 3 5 7 9 tgtgaacac-ctgtccttccgt tttggacac-ttgtcctttcca tctgaacac-ttgtccttttgt taaggacac-ctgtccttcttg tatgaacaa-ctgtcctcttca tttggacac-ttgtcctttcca tgtgaacaa-ctgtccttttcc tccatccaacctgtcctgaaat taatggaaaggtgtcctttggc ttgggttac-gtgtcctcaaga cannntgkcct. Figure4. hacA/hac1 Ǥ Ǥ A.niger ǤM. grisea ͵ ȋ ȌǤ hacA/hac1 Ǥ. 114GeneralDiscussion.
(21) Chapter5 ThePutativeActivationDomainofHacA
(22) ǡ
(23) ͳ ʹͷʹ ǦͳͲ ͳǡͳͺ ȋ Ǥ ȌǤ ͳͺ ͳͻͺǤ A.nigerHacAi ȋ ǤͷȌǡ Ǥ Figure5.ͳͺ ͳ ʹͲǦʹA.niger Ǥ. A. niger hacA ǡ hacA. 'hacAǤ Ǧ ȗ ȋ ͶȌǤ hacA Ǧ ǡ hacA gpdA Ǥ ǡ ǡ ǡ Ǧ ȋ ǤȌǤhacA ͳǦʹͳͶ 'hacAǡ Ǥ ʹͺͲǡ ǡ Ǥ ǡ ͳǦʹͺͲǤ ǡǡǮǯ Ǥ
(24) hacA ǡ Ǥ ǡ Ǧ hacA ȋ Ǥ Ͷǡ ͶȌǤ Ǧ ǡ HAC1 ǡ ǡ Ǥ GeneralDiscussion115.
(25) Chapter5 Figure6.Ǧ A. . nigerhacA Ǥ Ǥ Ǥ ʹͲǦ ǡ Ǧ Ǥ Ǧ Ǥ Ǥ ͳͲɊȀ Ǥ. hacA ȋ Ǥͷǡ ͶȌgpdA ȋ Ǥ ǤͶǡͶȌǤ ǡ Ǥ hacAu ͵ Ǥ gpdA ǡ hacA ͵ǯǦ hacAǤ ǡ ͵ ǡ Ǥ ǡ ǡ 'hacA Ͷ ǡ Ǥ 116GeneralDiscussion.
(26) Chapter5 Ǧ ǡ Ǧ Ȁ ͳ ȋ ǤȌǤ Ǧ ȋǤǤ ȌǤ. Figure7. Ǧ Ȁ ͳ Ǥ Ǧ Ȁ ͳ Ǥ. GeneralDiscussion117.
(27) Chapter5 TheCterminalDomainofHacAu Ǧ A. nigerǡ A. nidulans A. fumigatus ǡǦ ȋ Ǥ ͶǡʹȌǤ Ǥ ǦhacAȋ ǤͶǡͶȌǤ ǡ ǡ Ǧ Ǥ
(28) A. nigerǡ Ǥ
(29) ͳ ͳ ͳͺͻǤ hacAǡ ʹ XBP1 ǡ ǦǤ
(30) ͳ Ǧ Ǥ ͳ ͳ ǡ Ǥ Ǧ ǡ Ǧ Ǥ ʹʹʹ Ǧ ͶͲ ǡ ͳͺΨǤ
(31) ǡǦ ͳͳ Ǥ ȋȌǦ Ǥǯ ͳȋ ͳȌǡ ͵͵Ǥ
(32) ǡ Ǧ Ȁ ͳǡ ȋ ǤͺȌǤ ǦA.niger ȋʹͶͷǡʹͶǡʹͷ͵Ȍ ͳǤͳȋǣȀȀǤ ǤǤȀ ȀȀȌǡ Ǥ ͳǡ Ǥ ǡ ǡȋȌ 'hacAȋ Ǥͳ Ͷǡ Ͷ Ǥ ȌǤ hacA ǡ Ǥ ǡ ȋ Ȍ
(33) Ǥ. 118GeneralDiscussion.
(34) Chapter5. Figure 8. ȋȌ Ǧ Ȁ ͳ Ǥ ǡ Ǥ T. reesei, F. graminearumǡM.grisea ͳȀ Aspergilli Ǥ. GeneralDiscussion119.
(35) Chapter5 LongRangeBasePairingandtheTranscriptionalSwitch
(36) ǡhacAi ʹ͵Ͳͷǯ hacAu ǤhacA ǡ hacAǡ ʹǤ ǡhacA ǣ hacAǡ hacAǡ hacA hacA. Ǥ Ǧǡ hacA ǡ HAC1u ȋ Ǥ ͺǡ ͳȌ ͳ͵Ǥ ǡ hacA ȋ ǤͻȌǤ ǡ
(37) hacA Ǥ hacAi Ǥ hacAu
(38) Ǥǡ ǡ A. niger Ǥ Figure 9. . A. niger hacAu ǡ Ǥ hacA ͷǯ hacA Ǥ ǡͷǯhacA Ǥ ǡ Ǥ hacAuhacAi Ǥ. . 120GeneralDiscussion.
(39) Chapter5
(40) ǡ Ǥ
(41) hacA Ǥ ǡ ǡ Ǥ CpcA
(42) S. cerevisiae Ͷ ȋ Ǥ ͻǡ ͳȌǤ hacAȋ ǤǡͶȌǤ A.niger Ͷǡ hacAǡ ͳ ȋ Ǥ ͵ǡ ͶȌǤ hacA Aspergilli ͳǡ ȋ Ǥ ͳͲȌǤ
(43) ǡ Ȁ Ͷǡ ǡ AspergillusǤ. Figure 10. hacA AspergilliǤ hacA ͳ Ǥ ͳ Ǥ Ǥ. GeneralDiscussion121.
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