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Molecular biomarkers of methanotrophs in Sphagnum peat bogs

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Wetlands are the most important natural source for atmospheric methane [1], in spite of the fact that most of the methane produced in a peat bog never reaches the atmosphere. This methane is consumed by methanotrophs, aerobic methane oxidizing bacteria. Molecular probes have shown that such bacteria live as symbionts in Sphagnum [2].

The significance of this symbiosis on a global scale is, however, yet unknown. The assessment of this, and of the impact of past and future environmental change on the activity of methanotrophs, is crucial for an accurate understanding of the global carbon cycle.

INTRODUCTION

FURTHER RESEARCH

Sphagnum samples were analysed for molecular biomarkers of methanotrophs. Presence of methanotrophs was confirmed by methane consumption during incubation.

Known methanotroph biomarkers include specific mono- unsaturated fatty acids and 13C depleted hopanoids [3], [4].

Methanotrophs can be divided into two genetically distinct groups. Type I methanotrophs use solely methane as their carbon source. Type II methanotrophs use both methane and carbon dioxide as their carbon source, and are dominant in high methane, low nutrient environments [4].

Ongoing research focuses on an inventory of the symbiosis between Sphagnum and methanotrophs and on lipid analyses of isolated methanotroph cultures. Incubation of Sphagnum with labelled methane is in progress in order to establish the methanotrophic origin of hopanoids and to assess the incorporation of methane-derived carbon dioxide into specific Sphagnum lipids. Our ultimate goal is to develop an adequate approach combining biomarkers and stable isotopes, in order to investigate environmental controls of methane cycling in ancient peats.

C32-hopanol was obtained after treatment with periodic acid, and was found to have a δ13C value of ~-35‰. The relatively low depletion can be explained by dominance of type II methanotrophs, which use both methane and carbon dioxide.

No diagnostic C18:1ω8 fatty acids were found, but mainly C18:1ω9, C18:1ω7 and C16:1ω7. C18:1 fatty acids were dominant compared to C16:1 fatty acids, indicating prevalence of type II methanotrophs [4]. This is in agreement with cultured acidophilic type II methanotrophs [8] and this is also likely in the acidic, high methane, low nutrient environment.

References: [1] Smith, L.C., MacDonald, G.M., Velichko, A.A., Beilman, O.K., Frey, K.E., Kremenetski, K.V., Sheng, Y., 2004, Science 303, pp.

353-356; [2] Raghoebarsing, A.A., Smolders, A.J.P., Schmid, M.C., Rijpstra,W.I.C., Wolters-Arts M., Derksen, J., Jetten M.S.M., Schouten, S., Jaap S. Sinninghe Damsté, J.S., Lamers, L.P.M., Roelofs, J.G.M., Op den Camp, H.J.M. , Strous, M., 2005, Nature, Vol. 436, no. 25, pp. 1153- 1156; [3] Jahnke, L.L., Summons, R.E., Hope, J.M., Des Marais, D.J., 1999, Geochimica et Cosmochimica Acta, Vol. 63, No. 1, pp. 79-93; [4]

Hanson, R.S., and Hanson, T.E., 1996, Microbiological Reviews, Vol. 60 no. 2; [5] Talbot, H.M., Farrimond, P., 2007, Organic Geochemistry, Vol.

38, pp. 1212-1225; [6] Rohmer, M., Bisseret, P., Neunlist, S., 1992, in Biological Markers in Sediments and Petroleum, pp. 1-17, Prentice Hall, London; [7] Post, W..M., Emanuel, W.R., Xinke, P.J., Strangenberger, A.G., 1982, Nature 298, 156; [8] Dedysh, S.N., Berestovskaya, Y.Y., Vasylieva, L.V., Belova, S.E., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., Liesack, W. and Zavarzin, G.A., 2004, Int. Journ. of Syst. and Evol. Microbiology 54, pp. 151-156

PRELIMINARY RESULTS APPROACH

Fig. 1. Sphagnum, peat moss, proliferates in nutrient poor, rain fed, raised bogs. Sphagnum exchanges nutrients for protons, acidifying its environment.

Fig. 2. Symbiotic methanotrophs oxidize methane to carbon dioxide, which is in turn assimilated by Sphagnum. This way methane is efficiently recycled.

CH4 CO2

Fig. 2b,c) Bacteriohopanetetrol (2b), common in methanotrophs [5], forms C32-hopanol (2c) after periodic acid treatment, enabling isotope analyses [6].

Fig. 3. Sphagnum peat bogs have, due to their acidity, a very high carbon accumulation potential. It has been estimated that peatlands store up to one- third of the world's soil carbon [1].

Fig. 6. The environment of Dewey marsh, Bodmin Moor, UK. All pictures shown on this poster are from this site.

Molecular biomarkers of methanotrophs in Sphagnum peat bogs

J.F. van Winden1, G-J. Reichart1, N. Kip2, H.J.M. Op den Camp2, J.S. Sinninghe Damsté1,3

1. Utrecht University, Department of Earth Sciences, j.vanwinden@geo.uu.nl; P.O. Box 80.021, 3508 TA Utrecht, The Netherlands, ; 2. Radboud University Nijmegen; 3. Royal Netherlands Institute for Sea research (NIOZ)

OH

Fig. 1a) C18:1ω8 fatty acid, 18 carbon atoms, 1 double bond at position ω8. Together with C16:1ω8 one of the two fatty acids specific for methanotrophs.

Fig. 4. Total extract lipid chromatogram of Sphagnum, methylated and silylated.

Fig. 5. Polar fraction of extract, treated with periodic acid, methylated and silylated, showing released C32-hopanol.

HO

O 8 ω

18 1

picture 1243

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IV: ursolic acid V: waxesters

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