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Gene expression in chromosomal Ridge domains : influence on transcription,
mRNA stability, codon usage, and evolution
Gierman, H.J.
Publication date
2010
Link to publication
Citation for published version (APA):
Gierman, H. J. (2010). Gene expression in chromosomal Ridge domains : influence on
transcription, mRNA stability, codon usage, and evolution.
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167 List of publications
11
List of Publications
1. Gierman HJ*, Koster J*, Indemans MH, Versteeg R. Genes in chromosomal Ridge domains have increased mRNA folding stability and half-life, further contributing to their high expression. Submitted.
2. Gierman HJ, Koster J, Indemans MH, Koster J, Molenaar JJ, Efstathioudou C, van Sluis P, Volckmann R, Geerts D, de Preter K, Øra I, Speleman F, Versteeg R. EZH2 overexpression associated with gain of chromosome arm 7q is essential for neuroblastoma cell cycle progression and a marker of poor prognosis.
Submitted.
3. Koster J*, Gierman HJ*, Indemans MH, Versteeg R. A model to explain natural selection for extreme levels of protein expression in the human genome.
Submitted.
4. Mateos-Langerak J, Bohn M, de Leeuw W, Giromus O, Manders EM, Verschure PJ, Indemans MH, Gierman HJ, Heermann DW, van Driel R, Goetze S. Spatially confined folding of chromatin in the interphase nucleus. Proc Natl Acad Sci U S
A. 2009 Mar 10;106(10):3812-7.
5. Gierman HJ, Versteeg R. Clustering of highly expressed genes in the human genome. Encyclopedia of Life Sciences. 2008 Apr;30:a0005931 John Wiley & Sons, Ltd: Chichester.
6. Gierman HJ, Indemans MH, Koster J, Goetze S, Seppen J, Geerts D, van Driel R, Versteeg R. Domain-wide regulation of gene expression in the human genome. Genome Res. 2007 Sep;17(9):1286-95.
7. Goetze S, Mateos-Langerak J, Gierman HJ, de Leeuw W, Giromus O, Indemans MH, Koster J, Ondrej V, Versteeg R, van Driel R. The three-dimensional structure of human interphase chromosomes is related to the transcriptome map. Mol Cell
Biol. 2007 Jun;27(12):4475-87.
8. Ettema TJ, Makarova KS, Jellema GL, Gierman HJ, Koonin EV, Huynen MA, de Vos WM, van der Oost J. Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism. J Bacteriol. 2004 Nov;186(22):7754-62.
9. Gierman HJ, Colloca C, Gaido M, Aciar R, Sosa V, Pennisse L, Bustos D. 2002 Biotransformación de ambroxide por wilsonomyces carpophilus. I Congreso
Latinoamericano de Fitoquimíca. Abstract 47.
