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University of Groningen In silico strategies to improve insight in breast cancer Bense, Rico

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University of Groningen

In silico strategies to improve insight in breast cancer

Bense, Rico

DOI:

10.33612/diss.101935267

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below.

Document Version

Publisher's PDF, also known as Version of record

Publication date: 2019

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Bense, R. (2019). In silico strategies to improve insight in breast cancer. Rijksuniversiteit Groningen. https://doi.org/10.33612/diss.101935267

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Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum.

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IN SILICO STRATEGIES TO IMPROVE

INSIGHT IN BREAST CANCER

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Printing of this thesis was financially supported by the Graduate School of Medical Sciences, Stichting Werkgroep Interne Oncologie, and the University of Groningen.

Cover: Remco Wetzels

Printed by: ridderprint.nl

ISBN: 978-94-034-2156-8

ISBN (electronic version): 978-94-034-2155-1 © 2019 R.D. Bense

All rights reserved. No part of this thesis may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, mechanically, by photocopying, recording, or otherwise, without prior written permission of the author.

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In silico strategies to improve

insight in breast cancer

Proefschrift

ter verkrijging van de graad van doctor aan de Rijksuniversiteit Groningen

op gezag van de

rector magnificus prof. dr. C. Wijmenga en volgens besluit van het College voor Promoties.

De openbare verdediging zal plaatsvinden op woensdag 20 november 2019 om 16.15 uur

door

Rico Delano Bense

geboren op 15 augustus 1991 te Venlo

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Promotores

Prof dr. E.G.E. de Vries Dr. C.P. Schröder

Copromotor

Dr. R.S.N. Fehrmann

Beoordelingscommissie

Prof dr. T.N. Wijmenga Prof dr. E. van der Wall Prof dr. H. Hollema

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Paranifmen

Arkajyoti Bhattacharya Maarten Huismans

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CONTENTS

Chapter 1 General introduction 9

Chapter 2 Considering the biology of late recurrences in selecting patients for extended endocrine therapy in breast cancer Cancer Treat Rev. 2018;70:118-126

15

Chapter 3 Relevance of tumor-infiltrating immune cell composition and functionality for disease outcome in breast cancer

J Natl Cancer Inst. 2017;109:djw192

37

Chapter 4 Consideration of breast cancer subtype in targeting the androgen receptor

Pharmacol Ther. 2019;200:135-147

85

Chapter 5 Transcriptional effects of copy number alterations and their associations with biological processes in a large set of human cancers

Submitted

117

Chapter 6 Functional genomic mRNA profiling of a large cancer data base demonstrates mesothelin overexpression in a broad range of tumor types

Oncotarget. 2015;6:28164-28172

151

Chapter 7 Discussion and future perspectives 165

Chapter 8 Nederlandse samenvatting (Dutch summary) 173

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