• No results found

University of Groningen On the origin of species assemblages of Bornean microsnails Hendriks, Kasper

N/A
N/A
Protected

Academic year: 2021

Share "University of Groningen On the origin of species assemblages of Bornean microsnails Hendriks, Kasper"

Copied!
17
0
0

Bezig met laden.... (Bekijk nu de volledige tekst)

Hele tekst

(1)

On the origin of species assemblages of Bornean microsnails

Hendriks, Kasper

DOI:

10.33612/diss.124819761

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from

it. Please check the document version below.

Document Version

Publisher's PDF, also known as Version of record

Publication date:

2020

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Hendriks, K. (2020). On the origin of species assemblages of Bornean microsnails. University of

Groningen. https://doi.org/10.33612/diss.124819761

Copyright

Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the

author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons).

Take-down policy

If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately

and investigate your claim.

Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the

number of authors shown on this cover page is limited to 10 maximum.

(2)
(3)
(4)

References

Alexander, J. E., and A. P. Covich. 1991. Predation risk and avoidance behavior in two freshwater snails. The Biological Bulletin 180:387–393.

Allen, A. P., T. R. Whittier, P. R. Kaufmann, D. P. Larsen, R. J. O’Connor, R. M. Hughes, R. S. Stemberger, S. S. Dixit, R. O. Brinkhurst, A. T. Herlihy, and S. G. Paulsen. 1999. Concordance of taxonomic richness patterns across multiple assemblages in lakes of the northeastern United States. Canadian Journal of Fisheries and Aquatic Sciences 56:739–747.

Alonso, D., R. S. Etienne, and A. J. McKane. 2006. The merits of neutral theory. Trends in Ecology & Evolution 21:451–457.

Ancrenaz, M., F. Oram, L. Ambu, I. Lackman, E. Ahmad, H. Elahan, H. Kler, N. K. Abram, and E. Meijaard. 2015. Of Pongo, palms and perceptions: a multidisciplinary assessment of Bornean orang-utans Pongo pygmaeus in an oil palm context. Oryx 49:465–472.

Anderson, M. J. 2017. Permutational multivariate analysis of variance (PERMANOVA). Pages 1–15 Wiley StatsRef: Statistics Reference Online. American Cancer Society.

Andersson, A. F., M. Lindberg, H. Jakobsson, F. Bäckhed, P. al Nyrén, and L. Engstrand. 2008. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLOS ONE 3:e2836.

Archer, F. I., P. E. Adams, and B. B. Schneiders. 2017. stratag: An R package for manipulating, summarizing and analysing population genetic data. Molecular Ecology Resources 17:5–11.

August, P. V. 1983. The role of habitat complexity and heterogeneity in structuring tropical mammal communities. Ecology 64:1495–1507.

Azmi, R. 1998. Natural vegetation of the Kinabatangan Floodplain. Part 1: an introduction to its natural vegetation, including a preliminary plant checklist of the region. World Wide Fund for Nature, Kuala Lumpur, Malaysia.

Barbour, M. A., M. A. Rodriguez‐Cabal, E. T. Wu, R. Julkunen‐Tiitto, C. E. Ritland, A. E. Miscampbell, E. S. Jules, and G. M. Crutsinger. 2015. Multiple plant traits shape the genetic basis of herbivore community assembly. Functional Ecology 29:995–1006.

Barker, G. M., and M. G. Efford. 2004. Predatory gastropods as natural enemies of terrestrial gastropods and other invertebrates. Pages 279–403 Natural enemies of terrestrial molluscs. CABI Publishing, Wallingford, UK. Baur, A., and B. Baur. 1990. Are roads barriers to dispersal in the land snail Arianta arbustorum? Canadian

Journal of Zoology 68:613–617.

Baur, B., and A. Baur. 1995. Habitat-related dispersal in the rock-dwelling land snail Chondrina clienta. Ecography 18:123–130.

Behmer, S. T., and A. Joern. 2008. Coexisting generalist herbivores occupy unique nutritional feeding niches. Proceedings of the National Academy of Sciences 105:1977–1982.

Bell, K. L., V. M. Loeffler, and B. J. Brosi. 2017. An rbcL reference library to aid in the identification of plant species mixtures by DNA metabarcoding. Applications in Plant Sciences 5:1600110.

Bell, R. H. V. 1971. A grazing ecosystem in the Serengeti. Scientific American 225:86–93.

Belovsky, G. E. 1986. Generalist herbivore foraging and its role in competitive interactions. Integrative and Comparative Biology 26:51–69.

van Benthem Jutting, W. 1948. Critical revision of the Javanese operculate land-shells of the families Hydrocenidae, Helicinidae, Cyclophoridae, Pupinidae, and Cochlostomatidae. Archipel, Buitenzorg. van Benthem Jutting, W. 1953. Systematic studies on the non-marine Mollusca of the Indo-Australian

Archipelago. III. Critical revision of the Javanese pulmonate land-snails of the families Ellobiidae to Limacidae, with an appendix on Helicarionidae. Treubia 21:291–435.

Bird, C. E., S. A. Karl, P. E. Smouse, and R. J. Toonen. 2011. Detecting and measuring genetic differentiation. Pages 31–55 in C. Held, S. Koenemann, and C. Schubart, editors. Phylogeography and population genetics in Crustacea. CRC Press, Boca Raton, FL.

Boettger, C. R. 1926. Untersuchungen über die Entstehung eines Faunenbildes. Zur Zoogeographie der Weichtiere Schlesiens. Zeitschrift für Morphologie und Ökologie der Tiere 6:333–414.

(5)

Bolker, B. M., M. E. Brooks, C. J. Clark, S. W. Geange, J. R. Poulsen, M. Henry, H. Stevens, and J.-S. S. White. 2009. Generalized linear mixed models: a practical guide for ecology and evolution. Trends in Ecology & Evolution 24:127–135.

Bolyen, E., J. R. Rideout, M. R. Dillon, N. A. Bokulich, C. Abnet, G. A. Al-Ghalith, H. Alexander, E. J. Alm, M. Arumugam, and F. Asnicar. 2018. QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints.

Boonratana, R. 2000. A study of the vegetation of the forests in the lower Kinabatangan region, Sabah, Malaysia. Malayan Nature Journal 54:271–288.

Borcard, D., and P. Legendre. 2012. Is the Mantel correlogram powerful enough to be useful in ecological analysis? A simulation study. Ecology 93:1473–1481.

Bordenstein, S. R., and K. R. Theis. 2015. Host biology in light of the microbiome: ten principles of holobionts and hologenomes. PLOS Biology 13:e1002226.

Bouckaert, R., J. Heled, D. Kühnert, T. Vaughan, C.-H. Wu, D. Xie, M. A. Suchard, A. Rambaut, and A. J. Drummond. 2014. BEAST2: a software platform for Bayesian evolutionary analysis. PLOS Computational Biology 10:e1003537.

Brandes, J. 1951. Verschleppung von Landschnecken durch einen Singvogel. Archiv für Molluskenkunde 80:85. Brooks, M. E., K. Kristensen, K. J. van Benthem, A. Magnusson, C. W. Berg, A. Nielsen, H. J. Skaug, M. Machler, and B. M. Bolker. 2017. glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling. The R Journal 9:378–400.

Brown, R. P., and Z. Yang. 2011. Rate variation and estimation of divergence times using strict and relaxed clocks. BMC Evolutionary Biology 11:271.

Bruno, J. F., J. J. Stachowicz, and M. D. Bertness. 2003. Inclusion of facilitation into ecological theory. Trends in Ecology & Evolution 18:119–125.

Burridge, A. K., E. Goetze, D. Wall-Palmer, S. L. Le Double, J. Huisman, and K. T. C. A. Peijnenburg. 2017. Diversity and abundance of pteropods and heteropods along a latitudinal gradient across the Atlantic Ocean. Progress in Oceanography 158.

Byers, J. E. 2000. Competition between two estuarine snails: implications for invasions of exotic species. Ecology 81:1225–1239.

Cadotte, M. W. 2006. Dispersal and species diversity: a meta-analysis. The American Naturalist 167:913–924. Callahan, B. J., P. J. McMurdie, M. J. Rosen, A. W. Han, A. J. A. Johnson, and S. P. Holmes. 2016. DADA2:

high-reso-lution sample inference from Illumina amplicon data. Nature Methods 13:581.

Cameron, R. A. D., and B. M. Pokryszko. 2005. Estimating the species richness and composition of land mollusc communities: problems, consequences and practical advice. Journal of Conchology 38:529–548. Chang, H.-W. 1991. Activity and weight loss in relation to solar radiation in the polymorphic land snail Cepaea

nemoralis. Journal of Zoology 225:213–225.

Chao, A. 1984. Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics 11:265–270.

Chapman, M. G. 1994. Small-scale patterns of distribution and size-structure of the intertidal littorinid Littorina

unifasciata (Gastropoda: Littorinidae) in New South Wales. Marine and Freshwater Research 45:635–652.

Chase, J. M. 2007. Drought mediates the importance of stochastic community assembly. Proceedings of the National Academy of Sciences 104:17430–17434.

Chase, J. M. 2014. Spatial scale resolves the niche versus neutral theory debate. Journal of Vegetation Science 25:319–322.

Chase, J. M., and J. A. Myers. 2011. Disentangling the importance of ecological niches from stochastic processes across scales. Philosophical Transactions of the Royal Society B: Biological Sciences 366:2351–2363. Clark, J. S. 2009. Beyond neutral science. Trends in Ecology & Evolution 24:8–15.

Clements, R., P. K. Ng, X. X. Lu, S. Ambu, M. Schilthuizen, and C. J. Bradshaw. 2008a. Using biogeographical patterns of endemic land snails to improve conservation planning for limestone karsts. Biological conservation 141:2751–2764.

Clements, R., N. S. Sodhi, M. Schilthuizen, and P. K. L. Ng. 2008b. Limestone karsts of Southeast Asia: imperiled arks of biodiversity. Bioscience 56:733–742.

Colman, D. R., E. C. Toolson, and C. D. Takacs‐Vesbach. 2012. Do diet and taxonomy influence insect gut bacterial communities? Molecular Ecology 21:5124–5137.

(6)

Cook, L. M., J. D. Currey, and V. H. Sarsam. 1985. Differences in morphology in relation to microhabitat in littorinid species from a mangrove in Papua New Guinea (Mollusca: Gastropoda). Journal of Zoology 206:297–310.

Cowie, R. H. 1984. Density, dispersal and neighbourhood size in the land snail Theba pisana. Heredity 52:391–401. Cowie, R. H. 1985. Microhabitat choice and high temperature tolerance in the land snail Theba pisana (Mollusca:

Gastropoda). Journal of Zoology 207:201–211.

Crandall, E. D., E. A. Treml, and P. H. Barber. 2012. Coalescent and biophysical models of stepping-stone gene flow in neritid snails. Molecular Ecology 21:5579–5598.

Crowe, T. P., and A. J. Underwood. 1998. Testing behavioural “preference” for suitable microhabitat. Journal of Experimental Marine Biology and Ecology 225:1–11.

Crowther, J. 1982. Ecological observations in a tropical karst terrain, West Malaysia. I. Variations in topography, soils and vegetation. Journal of Biogeography:65–78.

Czógler, K., and M. Rotarides. 1938. Analyse einer vom Wasser angeschwemmten Molluskenfauna. Arbeiten Ungarischen Biologische Forschungsinstitut 10:8–44.

Dance, S. 1970. Non-marine molluscs of Borneo. I. Streptaxacea: Streptaxidae. Journal of Conchology 27:149–162. D’Andrea, R., T. Gibbs, and J. P. O’Dwyer. 2019. Emergent neutrality in consumer-resource dynamics.

bioRxiv:710541.

Darriba, D., G. L. Taboada, R. Doallo, and D. Posada. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772–772.

Darwin, C. 1859. On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. John Murray, London.

Declerck, S., J. Vandekerkhove, L. Johansson, K. Muylaert, J. M. Conde-Porcuna, K. Van Der Gucht, C. Pérez-Martínez, T. Lauridsen, K. Schwenk, G. Zwart, W. Rommens, J. López-Ramos, E. Jeppesen, W. Vyverman, L. Brendonck, and L. De Meester. 2005. Multi-group biodiversity in shallow lakes along gradients of phosphorus and water plant cover. Ecology 86:1905–1915.

Delignette-Muller, M. L. 2015. fitdistrplus: an R package for fitting distributions. Journal of Statistical Software 64:1–34.

DeSantis, T. Z., P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, and G. L. Andersen. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 72:5069–5072.

Dobson, D., and S. Bailey. 1982. Duration of feeding and crop fullness in Deroceras reticulatum. Journal of Molluscan Studies 48:371–372.

Donald, K. M., M. Kennedy, and H. G. Spencer. 2005. Cladogenesis as the result of long-distance rafting events in south pacific topshells (Gastropoda, Trochidae). Evolution 59:1701–1711.

Donald, K. M., D. J. Winter, A. L. Ashcroft, and H. G. Spencer. 2015. Phylogeography of the whelk genus Cominella (Gastropoda: Buccinidae) suggests long-distance counter-current dispersal of a direct developer. Biological Journal of the Linnean Society 115:315–332.

Dörge, N., C. Walther, B. Beinlich, and H. Plachter. 1999. The significance of passive transport for dispersal in terrestrial snails (Gastropoda, Pulmonata). Zeitschrift für Ökologie und Naturschutz 8:1–10.

Dornelas, M., S. R. Connolly, and T. P. Hughes. 2006. Coral reef diversity refutes the neutral theory of biodiversity. Nature 440:80–82.

DuBowy, P. J. 1988. Waterfowl communities and seasonal environments: temporal variability in interspecific competition. Ecology 69:1439–1453.

Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.

Engel, P., and N. A. Moran. 2013. The gut microbiota of insects-diversity in structure and function. FEMS Microbiology Reviews 37:699–735.

Estes, J. G., N. Othman, S. Ismail, M. Ancrenaz, B. Goossens, L. N. Ambu, A. B. Estes, and P. A. Palmiotto. 2012. Quantity and configuration of available elephant habitat and related conservation concerns in the Lower Kinabatangan Floodplain of Sabah, Malaysia. PLOS ONE 7:e44601.

Etienne, R. S. 2005. A new sampling formula for neutral biodiversity. Ecology Letters 8:253–260.

Etienne, R. S. 2007. A neutral sampling formula for multiple samples and an ‘exact’ test of neutrality. Ecology Letters 10:608–618.

(7)

Etienne, R. S. 2009. Improved estimation of neutral model parameters for multiple samples with different degrees of dispersal limitation. Ecology 90:847–852.

Etienne, R. S., and B. Haegeman. 2011. The neutral theory of biodiversity with random fission speciation. Theoretical Ecology 4:87–109.

Etienne, R. S., and B. Haegeman. 2012. A conceptual and statistical framework for adaptive radiations with a key role for diversity dependence. The American Naturalist 180:75–89.

Etienne, R. S., and H. Olff. 2005. Confronting different models of community structure to species-abundance data: a Bayesian model comparison. Ecology Letters 8:493–504.

Excoffier, L., and H. Lischer. 2010. Arlequin suite version 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564–567.

Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491. Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61:1–10. Fanelli, D. 2012. Negative results are disappearing from most disciplines and countries. Scientometrics

90:891–904.

Fine, P. V. A. 2002. The invasibility of tropical forests by exotic plants. Journal of Tropical Ecology 18:687–705. Flari, V., and M. Lazaridou-Dimitriadou. 1996. Evolution of digestion of carbohydrates in the separate parts of

the digestive tract of the edible snail Helix lucorum (Gastropoda: Pulmonata: Stylommatophora) during a complete 24-hour cycle and the first days of starvation. Journal of Comparative Physiology B 165:580–591. Foon, J. K., R. Clements, and T.-S. Liew. 2017. Diversity and biogeography of land snails (Mollusca, Gastropoda) in

the limestone hills of Perak, Peninsular Malaysia. ZooKeys 682:1.

Freeland, W. J., and D. H. Janzen. 1974. Strategies in herbivory by mammals: the role of plant secondary compounds. The American Naturalist 108:269–289.

Gagnon, K., E. Rothäusler, A. Syrjänen, M. Yli-Renko, and V. Jormalainen. 2013. Seabird guano fertilizes Baltic sea littoral food webs. PLOS ONE 8:61284.

Garzon‐Lopez, C. X., P. A. Jansen, S. A. Bohlman, A. Ordonez, and H. Olff. 2014. Effects of sampling scale on patterns of habitat association in tropical trees. Journal of Vegetation Science 25:349–362.

Gause, G. F. 1934. The struggle for existence. First edition. Williams and Wilkins, Baltimore, MD.

Geist, V. 1974. On the relationship of social evolution and ecology in ungulates. Integrative and Comparative Biology 14:205–220.

Gerhardt, C. 2014. A place for humility: Whitman, Dickinson, and the natural world. University of Iowa Press. Gillespie, R. 2004. Community assembly through adaptive radiation in Hawaiian spiders. Science 303:356–359. Gillespie, R. G., B. G. Baldwin, J. M. Waters, C. I. Fraser, R. Nikula, and G. K. Roderick. 2012. Long-distance

dispersal: a framework for hypothesis testing. Trends in Ecology & Evolution 27:47–56.

Gillespie, R. G., S. P. Benjamin, M. S. Brewer, M. A. J. Rivera, and G. K. Roderick. 2018. Repeated diversification of ecomorphs in Hawaiian stick spiders. Current Biology 28:941-947.e3.

Glasl, B., C. E. Smith, D. G. Bourne, and N. S. Webster. 2018. Exploring the diversity-stability paradigm using sponge microbial communities. Scientific Reports 8:8425.

Goh, H. C. 2017. Nature and community-based tourism (CBT) for poverty alleviation: a case study of Lower Kinabatangan, East Malaysia. Geografia, Malaysian Journal of Society and Space 11.

Gold, J. R., C. P. Burridge, and T. F. Turner. 2001. A modified stepping-stone model of population structure in red drum, Sciaenops ocellatus (Sciaenidae), from the northern Gulf of Mexico. Genetica 111:305–317. Gordon, I. J., and A. W. Illius. 1989. Resource partitioning by ungulates on the Isle of Rhum. Oecologia 79:383–389. Grinnell, J. 1917. The niche-relationships of the California Thrasher. Auk 34:427–433.

Grömping, U. 2006. Relative importance for linear regression in R: the package relaimpo. Journal of Statistical Software 17:1–27.

Haddad, N. M., G. M. Crutsinger, K. Gross, J. Haarstad, J. M. H. Knops, and D. Tilman. 2009. Plant species loss decreases arthropod diversity and shifts trophic structure. Ecology Letters 12:1029–1039.

Haddad, N. M., D. Tilman, J. Haarstad, M. Ritchie, and J. M. H. Knops. 2001. Contrasting effects of plant richness and composition on insect communities: a field experiment. The American Naturalist 158:17–35. Haegeman, B., and R. S. Etienne. 2017. A general sampling formula for community structure data. Methods in

(8)

Harbaugh, D. T., W. L. Wagner, G. J. Allan, and E. A. Zimmer. 2009. The Hawaiian Archipelago is a stepping stone for dispersal in the Pacific: an example from the plant genus Melicope (Rutaceae). Journal of Biogeography 36:230–241.

Hardin, G. 1960. The competitive exclusion principle. Science 131:1292–1297. Harpole, W. 2010. Neutral theory of species diversity. Nature Education.

Harris, R. E., and W. A. G. Charleston. 1977. An examination of the marsh microhabitats of Lymnaea tomentosa and L. columella (Mollusca: Gastropoda) by path analysis. New Zealand Journal of Zoology 4:395–399. Harrison, S., and A. Hastings. 1996. Genetic and evolutionary consequences of metapopulation structure.

Trends in Ecology & Evolution 11:180–183.

Hatziioannou, M., N. Eleutheriadis, and M. Lazaridou-Dimitriadou. 1994. Food preferences and dietary overlap by terrestrial snails in Logos area (Edessa, Macedonia, Northern Greece). Journal of Molluscan Studies 60:331–341.

Hawkins, B. A., and E. E. Porter. 2003. Does herbivore diversity depend on plant diversity? The case of California butterflies. The American Naturalist 161.

Heil, M. 2008. Indirect defence via tritrophic interactions. The New Phytologist 178:41–61.

Hendriks, K. P., G. Alciatore, M. Schilthuizen, and R. S. Etienne. 2019a. Phylogeography of Bornean land snails suggests long-distance dispersal as a cause of endemism. Journal of Biogeography 46:932–944. Hendriks, K. P., K. Bisschop, J. C. Kavanagh, H. H. Kortenbosch, A. E. A. Larue, F. J. Richter Mendoza, M.

Schilthuizen, and R. S. Etienne. 2019b. Fieldwork to sample microsnails for diet and microbiome studies along the Kinabatangan River, Sabah, Malaysian Borneo. The Malacologist 72:33–38.

Hillebrand, H. 2004. On the generality of the latitudinal diversity gradient. The American Naturalist 163:192–211. Hird, S. M., H. Ganz, J. A. Eisen, and W. M. Boyce. 2018. The cloacal microbiome of five wild duck species varies by

species and influenza A virus infection status. mSphere 3:e00382-18.

Hoekstra, P., and M. Schilthuizen. 2011. Phylogenetic relationships between isolated populations of the limestone‐dwelling microsnail Gyliotrachela hungerfordiana (Gastropoda: Vertiginidae). Journal of Zoological Systematics and Evolutionary Research 49:266–272.

Hofreiter, M., H. N. Poinar, W. G. Spaulding, K. Bauer, P. S. Martin, G. Possnert, and S. Pääbo. 2000. A molecular analysis of ground sloth diet through the last glaciation. Molecular Ecology 9:1975–1984.

Holdridge, L. R. 1967. Life zone ecology. Tropical Science Center, San Jose, Costa Rica.

Holland, B. S., and M. G. Hadfield. 2002. Islands within an island: phylogeography and conservation genetics of the endangered Hawaiian tree snail Achatinella mustelina. Molecular Ecology 11:365–375.

Holt, R. D. 2006. Emergent neutrality. Trends in Ecology & Evolution 21:531–533.

Hubbell, S. P. 2001. The unified neutral theory of biodiversity and biogeography. Princeton University Press. Hughes, A. C. 2017. Understanding the drivers of Southeast Asian biodiversity loss. Ecosphere 8:e01624. Hutchinson, G. E. 1953. The concept of pattern in ecology. Proceedings of the Academy of Natural Sciences of

Philadelphia:1–12.

Hutchinson, G. E. 1959a. Homage to Santa Rosalia or why are there so many kinds of animals? The American Naturalist 93:145–159.

Hutchinson, G. E. 1961a. The paradox of the plankton. The American Naturalist 95:137–145.

Hutchison, C. S. 2005. Geology of North-West Borneo: Sarawak, Brunei and Sabah. Elsevier, Amsterdam. Hutto, R. L. 1985. Seasonal changes in the habitat distribution of transient insectivorous birds in Southeastern

Arizona: competition mediated? The Auk 102:120–132.

Irigoien, X., J. Huisman, and R. P. Harris. 2004. Global biodiversity patterns of marine phytoplankton and zooplankton. Nature 429:863–867.

Janzen, T., B. Haegeman, and R. S. Etienne. 2015. A sampling formula for ecological communities with multiple dispersal syndromes. Journal of Theoretical Biology 374:94–106.

Jarman, P. J. 1974. The social organisation of antelope in relation to their ecology. Behaviour 48:215–267. Jost, L. O. U. 2008. GST and its relatives do not measure differentiation. Molecular Ecology 17:4015–4026. Kartzinel, T. R., P. A. Chen, T. C. Coverdale, D. L. Erickson, W. J. Kress, M. L. Kuzmina, D. I. Rubenstein, W. Wang,

and R. M. Pringle. 2015. DNA metabarcoding illuminates dietary niche partitioning by African large herbivores. Proceedings of the National Academy of Sciences:201503283.

Katoh, K., and D. M. Standley. 2013a. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780.

(9)

Kearse, M., R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, and C. Duran. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649.

Keck, F., and M. Kahlert. 2019. Community phylogenetic structure reveals the imprint of dispersal-related dynamics and environmental filtering by nutrient availability in freshwater diatoms. Scientific Reports 9:1–8.

Kembel, S. W., P. D. Cowan, M. R. Helmus, W. K. Cornwell, H. Morlon, D. D. Ackerly, S. P. Blomberg, and C. O. Webb. 2010a. Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26:1463–1464.

Kernaléguen, L., J. P. Y. Arnould, C. Guinet, and Y. Cherel. 2015. Determinants of individual foraging specialization in large marine vertebrates, the Antarctic and subantarctic fur seals. Journal of Animal Ecology 84:1081–1091.

Khalik, M. Z., K. P. Hendriks, J. J. Vermeulen, and M. Schilthuizen. 2018. A molecular and conchological dissection of the “scaly” Georissa of Malaysian Borneo (Gastropoda, Neritimorpha, Hydrocenidae). ZooKeys 773:1–55. Khalik, M. Z., K. P. Hendriks, J. J. Vermeulen, and M. Schilthuizen. 2019. Conchological and molecular analysis of the “non-scaly” Bornean Georissa with descriptions of three new species (Gastropoda, Neritimorpha, Hydrocenidae). ZooKeys 840:35–86.

Kier, G., H. Kreft, T. M. Lee, W. Jetz, P. L. Ibisch, C. Nowicki, J. Mutke, and W. Barthlott. 2009. A global assessment of endemism and species richness across island and mainland regions. Proceedings of the National Academy of Sciences 106:9322–7.

Kiew, R., and S. P. Lim. 1996. Checklist of limestone plants in Sabah, Malaysia. Kimura, M. 1968. Evolutionary rate at the molecular level. Nature 217:624–626.

Kissling, W. D., C. Rahbek, and K. Böhning-Gaese. 2007. Food plant diversity as broad-scale determinant of avian frugivore richness. Proceedings of the Royal Society B: Biological Sciences 274:799–808.

Knight, J. 2003. Negative results: null and void. Nature 422:554–555.

Knops, J. M. H., D. Tilman, N. M. Haddad, S. Naeem, C. E. Mitchell, J. Haarstad, M. E. Ritchie, K. M. Howe, P. B. Reich, E. Siemann, and J. Groth. 1999. Effects of plant species richness on invasion dynamics, disease outbreaks, insect abundances and diversity. Ecology Letters 2:286–293.

Kobelt, W. 1902. Cyclophoridae. Friedlander und John.

Kobelt, W., and O. Möllendorff. 1899. Catalog der gegenwärtig lebend bekannten Pneumonopomen. Nachrichts-blatt der Deutschen Malakozoologischen Gesellschaft. P. Hartmann, Frankfurt am Main.

Kohl, K. D., and M. D. Dearing. 2016. The woodrat gut microbiota as an experimental system for understanding microbial metabolism of dietary toxins. Frontiers in Microbiology 7:1165.

Kohl, K. D., J. Varner, J. L. Wilkening, and M. D. Dearing. 2018. Gut microbial communities of American pikas (Ochotona princeps): evidence for phylosymbiosis and adaptations to novel diets. Journal of Animal Ecology 87:323–330.

Kohl, K. D., R. B. Weiss, J. Cox, C. Dale, and M. D. Dearing. 2014. Gut microbes of mammalian herbivores facilitate intake of plant toxins. Ecology Letters 17:1238–1246.

Krell, F.-T. 2004. Parataxonomy vs. taxonomy in biodiversity studies – pitfalls and applicability of ‘morphospecies’ sorting. Biodiversity & Conservation 13:795–812.

Kruckeberg, A. R., and D. Rabinowitz. 1985. Biological aspects of endemism in higher plants. Annual Review of Ecology and Systematics 16:447–479.

Książkiewicz, Z., K. Kiaszewicz, and B. Gotdyn. 2013. Microhabitat requirements of five rare vertiginid species (Gastropoda, Pulmonata: Vertiginidae) in wetlands of Western Poland. Malacologia 56:95–106. Latinne, A., S. Waengsothorn, V. Herbreteau, and J. R. Michaux. 2011. Evidence of complex phylogeographic

structure for the threatened rodent Leopoldamys neilli, in Southeast Asia. Conservation Genetics 12:1495–1511.

Lee, S. C., and B. R. Silliman. 2006. Competitive displacement of a detritivorous salt marsh snail. Journal of Experimental Marine Biology and Ecology 339:75–85.

van Leeuwen, C. H., G. van der Velde, J. M. van Groenendael, and M. Klaassen. 2012. Gut travellers: internal dispersal of aquatic organisms by waterfowl. Journal of Biogeography 39:2031–2040.

van Leeuwen, C. H., and G. van der Velde. 2012. Prerequisites for flying snails: external transport potential of aquatic snails by waterbirds. Freshwater Science 31:963–972.

(10)

Leibold, M. A., M. Holyoak, N. Mouquet, P. Amarasekare, J. M. Chase, M. F. Hoopes, R. D. Holt, J. B. Shurin, R. Law, D. Tilman, M. Loreau, and A. Gonzalez. 2004. The metacommunity concept: a framework for multi-scale community ecology. Ecology Letters 7:601–613.

Leibold, M. A., and M. A. McPeek. 2006. Coexistence of the niche and neutral perspectives in community ecology. Ecology 87:1399–1410.

Leigh, E. G. 2007. Neutral theory: a historical perspective. Journal of Evolutionary Biology 20:2075–2091. Lenth, R. 2019. Estimated marginal means, aka least-squares means (R package version 1.3.2).

Levri, E. P. 1998. Perceived predation risk, parasitism, and the foraging behaviour of a freshwater snail (Potamopyrgus antipodarum). Canadian Journal of Zoology 76:1878–1884.

Liew, T.-S. 2019a. Bornean terrestrial molluscs. http://borneanlandsnails.myspecies.info/.

Liew, T.-S. 2019b. Opisthostoma and Plectostoma (family Diplommatinidae). http://opisthostoma.myspecies.info/. Liew, T.-S. 2019c. Malay peninsular terrestrial molluscs. http://malaypeninsularsnail.myspecies.info/. Liew, T.-S., R. Clements, and M. Schilthuizen. 2008. Sampling micromolluscs in tropical forests: one size does not

fit all. Zoosymposia 1:271–280.

Liew, T.-S., A. C. Kok, M. Schilthuizen, and S. Urdy. 2014a. On growth and form of irregular coiled-shell of a terrestrial snail: Plectostoma concinnum (Fulton, 1901) (Mollusca: Caenogastropoda: Diplommatinidae). PeerJ 2:e383.

Liew, T.-S., and M. Schilthuizen. 2014a. A method for quantifying, visualising, and analysing gastropod shell form. PeerJ PrePrints.

Liew, T.-S., and M. Schilthuizen. 2014b. An ontogenetic perspective on the evolution of shell size and shell shape in the land snail genus Plectostoma. PeerJ PrePrints.

Liew, T.-S., and M. Schilthuizen. 2014c. Association between shell morphology of micro-land snails (genus

Plectostoma) and their predator’s predatory behaviour. PeerJ 2:e329.

Liew, T.-S., M. Schilthuizen, and J. J. Vermeulen. 2009. Systematic revision of the genus Everettia Godwin-Austen, 1891 (Mollusca: Gastropoda: Dyakiidae) in Sabah, northern Borneo. Zoological Journal of the Linnean Society 157:515–550.

Liew, T.-S., J. J. Vermeulen, M. E. Marzuki, and M. Schilthuizen. 2014b. A cybertaxonomic revision of the mi-cro-landsnail genus Plectostoma Adam (Mollusca, Caenogastropoda, Diplommatinidae), from Peninsular Malaysia, Sumatra and Indochina. Zookeys:1–107.

Lim, S. P., and R. Kiew. 1997. Gazetteer of limestone localities in Sabah, Borneo. The Gardens’ Bulletin Singapore 49:111–118.

Lindeman, R. H., P. F. Merenda, and R. Z. Gold. 1980. Introduction to bivariate and multivariate analysis. Scott Foresman & Co, Glenview, Ill.

Liu, Z., C. Lozupone, M. Hamady, F. D. Bushman, and R. Knight. 2007. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Research 35:e120–e120.

Longmuir, A., J. B. Shurin, and J. L. Clasen. 2007. Independent gradients of producer, consumer, and microbial diversity in lake plankton. Ecology 88:1663–1674.

Losos, J. B., and R. E. Ricklefs. 2009. Adaptation and diversification on islands. Nature 457:830–6.

Luck, G. W. 2007. A review of the relationships between human population density and biodiversity. Biological Reviews 82:607–645.

Lugo, A. E., and S. Brown. 1991. Comparing tropical and temperate forests. Pages 319–330 Comparative analyses of ecosystems: patterns, mechanisms, and theories. Springer.

Lundberg, J., and D. A. McFarlane. 2012. Post-speleogenetic biogenic modification of Gomantong Caves, Sabah, Borneo. Geomorphology 157–158:153–168.

MacArthur, R. H. 1965. Patterns of Species Diversity. Biological Reviews 40:510–533. MacArthur, R. H., and J. W. MacArthur. 1961. On bird species diversity. Ecology 42:594–598.

MacArthur, R. H., and E. O. Wilson. 1963. An equilibrium theory of insular zoogeography. Evolution 17:373–387. MacArthur, R. H., and E. O. Wilson. 1967. The theory of island biogeography. Princeton University Press,

Princeton, N.J.

Macke, E., A. Tasiemski, F. Massol, M. Callens, and E. Decaestecker. 2017. Life history and eco-evolutionary dynamics in light of the gut microbiota. Oikos 126:508–531.

Magurran, A. E., and B. J. McGill. 2011. Biological diversity: frontiers in measurement and assessment. Oxford University Press.

(11)

Maltagliati, F. 1998. Does the Mediterranean killifish Aphanius fasciatus (Teleostei: Cyprinodontidae) fit the one-dimensional stepping-stone model of gene flow? Environmental Biology of Fishes 53:385–392. Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer research

27:209–220.

Martin, K., and M. Sommer. 2004. Relationships between land snail assemblage patterns and soil properties in temperate-humid forest ecosystems. Journal of Biogeography 31:531–545.

bin Marzuki, M. E., and J. K. Foon. 2016. A new land snail, Arinia (Notharinia) micro (Caenogastropoda: Cyclophoroidea: Diplommatinidae), from a limestone karst in Perak, Peninsular Malaysia. Raffles Bulletin of Zoology 64:313–318.

Maturana, P., B. J. Brewer, S. Klaere, and R. Bouckaert. 2018. Model selection and parameter inference in phylogenetics using nested sampling. Systematic Biology 68:219-233.

Matzke, M. 1962. Drosselschmieden. Falke 9:381–385.

Matzke, N. J. 2013. BioGeoBEARS: biogeography with Bayesian (and likelihood) evolutionary analysis in R scripts. R package, version 0.2.

Matzke, N. J. 2014. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Systematic Biology 63:951–970.

Mayr, E. 1982. The growth of biological thought: diversity, evolution, and inheritance. Harvard University Press.

Mayr, E. 2000. The biological species concept. Species concepts and phylogenetic theory: a debate. Columbia University Press, New York:17–29.

Mazel, F., T. J. Davies, L. Gallien, J. Renaud, M. Groussin, T. Münkemüller, and W. Thuiller. 2016. Influence of tree shape and evolutionary time-scale on phylogenetic diversity metrics. Ecography 39:913–920.

McGill, B. J., R. S. Etienne, J. S. Gray, D. Alonso, M. J. Anderson, H. K. Benecha, M. Dornelas, B. J. Enquist, J. L. Green, F. He, and others. 2007. Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework. Ecology Letters 10:995–1015.

McMonagle, L. B., P. Lunt, M. E. J. Wilson, K. G. Johnson, C. Manning, and J. Young. 2011. A re-assessment of age dating of fossiliferous limestones in eastern Sabah, Borneo: implications for understanding the origins of the Indo-Pacific marine biodiversity hotspot. Palaeogeography, Palaeoclimatology, Palaeoecology 305:28–42. McMorrow, J., and M. A. Talip. 2001. Decline of forest area in Sabah, Malaysia: relationship to state policies, land

code and land capability. Global Environmental Change 11:217–230.

McMurdie, P. J., and S. Holmes. 2013. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLOS ONE 8:e61217.

Merckx, V. S., K. P. Hendriks, K. K. Beentjes, C. B. Mennes, L. E. Becking, K. T. Peijnenburg, A. Afendy, N. Arumugam, H. de Boer, A. Biun, M. M. Buang, P. P. Chen, A. Y. Chung, R. Dow, F. A. Feijen, H. Feijen, C. Feijen-van Soest, J. Geml, R. Geurts, B. Gravendeel, P. Hovenkamp, P. Imbun, I. Ipor, S. B. Janssens, M. Jocqu., H. Kappes, E. Khoo, P. Koomen, F. Lens, R. J. Majapun, L. N. Morgado, S. Neupane, N. Nieser, J. T. Pereira, H. Rahman, S. Sabran, A. Sawang, R. M. Schwallier, P. S. Shim, H. Smit, N. Sol, M. Spait, M. Stech, F. Stokvis, J. B. Sugau, M. Suleiman, S. Sumail, D. C. Thomas, J. van Tol, F. Y. Tuh, B. E. Yahya, J. Nais, R. Repin, M. Lakim, and M. Schilthuizen. 2015. Evolution of endemism on a young tropical mountain. Nature 524:347–50.

Meyer, J. R., E. Michel, P. B. McIntyre, B. E. Huntington, D. J. Long, and G. Lara. 2011. Scale-dependent processes of community assembly in an African rift lake. Freshwater Biology 56:2082–2093.

Miller, M. A., W. Pfeiffer, and T. Schwartz. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Pages 1–8 Gateway Computing Environments Workshop (GCE), 2010. IEEE, New Orleans. Muegge, B. D., J. Kuczynski, D. Knights, J. C. Clemente, A. González, L. Fontana, B. Henrissat, R. Knight, and J. I.

Gordon. 2011. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332:970–974.

Myers, N., R. A. Mittermeier, C. G. Mittermeier, G. A. Da Fonseca, and J. Kent. 2000. Biodiversity hotspots for conservation priorities. Nature 403:853–858.

Mysterud, A. 2000. Diet overlap among ruminants in Fennoscandia. Oecologia 124:130–137. Nathan, R. 2006. Long-distance dispersal of plants. Science 313:786–788.

Nei, M., and W.-H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences 76:5269–5273.

(12)

Nekola, J. C., B. F. Coles, and U. Bergthorsson. 2009. Evolutionary pattern and process within the Vertigo gouldii (Mollusca: Pulmonata, Pupillidae) group of minute North American land snails. Molecular Phylogenetics and Evolution 53:1010–1024.

Njunjić, I., and M. Schilthuizen. 2019. Cave list Kinabatangan, Sabah, Malaysian Borneo. http://doi.org/10.13140/ RG.2.2.26761.90726.

Noad, J. 2001. The Gomantong Limestone of eastern Borneo: a sedimentological comparison with the near-con-temporaneous Luconia Province. Palaeogeography, Palaeoclimatology, Palaeoecology 175:273–302. Nyström, P., and J. R. Pérez. 1998. Crayfish predation on the common pond snail (Lymnaea stagnalis): the effect of

habitat complexity and snail size on foraging efficiency. Hydrobiologia 368:201–208.

Oden, N. L., and R. R. Sokal. 1986. Directional autocorrelation: an extension of spatial correlograms to two dimensions. Systematic Zoology 35:608–617.

O’Hanlon, R. 2010. Trawler: a journey through the North Atlantic. Knopf Doubleday Publishing Group. Oke, O. C., and J. U. Chokor. 2009. The effect of land use on snail species richness and diversity in the tropical

rainforest of south-western Nigeria. African Scientist 10:95–108.

Oksanen, J., F. G. Blanchet, R. Kindt, P. Legendre, P. R. Minchin, R. B. O’hara, G. L. Simpson, P. Solymos, M. H. H. Stevens, and H. Wagner. 2017. Vegan: community ecology R package.

O’Rorke, R., B. S. Holland, G. M. Cobian, K. Gaughen, and A. S. Amend. 2016. Dietary preferences of Hawaiian tree snails to inform culture for conservation. Biological Conservation 198:177–182.

Otero-Schmitt, J., R. Cruz, C. García, and E. Rolán-Alvarez. 1997. Feeding strategy and habitat choice in Littorina

saxatilis (Gastropoda: Prosobranchia) and their role in the origin and maintenance of a sympatric

polymorphism. Ophelia 46:205–216.

Parent, C. E., and B. J. Crespi. 2006. Sequential colonization and diversification of Galapagos endemic land snail genus Bulimulus (Gastropoda, Stylommatophora). Evolution 60:2311–2328.

Pennings, S. C., M. T. Nadeau, and V. J. Paul. 1993. Selectivity and growth of the generalist herbivore Dolabella

auricularia feeding upon complementary resources. Ecology 74:879–890.

Phung, C.-C., P.-S. Heng, and T.-S. Liew. 2017. Land snails of Leptopoma Pfeiffer, 1847 in Sabah, Northern Borneo (Caenogastropoda: Cyclophoridae): an analysis of molecular phylogeny and geographical variations in shell form. PeerJ 5:e3981.

Pompanon, F., B. E. Deagle, W. O. C. Symondson, D. S. Brown, S. N. Jarman, and P. Taberlet. 2012. Who is eating what: diet assessment using next generation sequencing. Molecular Ecology 21:1931–1950.

Popper, K. 2005. The logic of scientific discovery. Routledge, Abingdon-on-Thames.

Price, M. N., P. S. Dehal, and A. P. Arkin. 2009. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Molecular Biology and Evolution 26:1641–1650.

Prins, H. H. T., and H. Olff. 1998. Species-richness of African grazer assemblages: towards a functional explanation. Page 449 Dynamics of Tropical Communities: 37th Symposium of the British Ecological Society. Cambridge University Press.

Purchon, R. D. 1977. The biology of the Mollusca. Pergamon Press, Oxford; New York.

Purchon, R. D., and M. E. Solari. 1968. Studies on the distribution of species of prosobranch and pulmonate snails on the limestone hills of Malaya. Page 223 Proceedings of the Symposium on Mollusca held at Cochin. Marine Biological Association of India, Mandapam Camp.

Purves, D. W., and L. A. Turnbull. 2011. Different but equal: the implausible assumption at the heart of neutral theory. Methods in Ecology and Evolution:1215–1225.

R Core Team. 2018. R: a language and environment for statistical computing. https://www.r-project.org/. Raheem, D. C., F. Naggs, R. C. Preece, Y. Mapatuna, L. Kariyawasam, and P. Eggleton. 2009. Structure and

conservation of Sri Lankan land-snail assemblages in fragmented lowland rainforest and village home gardens. Journal of Applied Ecology:1019–1028.

Ree, R. H., and I. Sanmartín. 2018. Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection. Journal of Biogeography 45:741–749. Renema, W., V. Warter, V. Novak, J. R. Young, N. Marshall, and F. Hasibuan. 2015. Ages of Miocene fossil localities

in the northern Kutai Basin (East Kalimantan, Indonesia). PALAIOS 30:26–39.

Revell, L. J. 2012. phytools: an R package for phylogenetic comparative biology (and other things). Methods in Ecology and Evolution 3:217–223.

(13)

Rigby, R. A., and D. M. Stasinopoulos. 2017. Generalized additive models for location, scale and shape. Journal of the Royal Statistical Society: Series C (Applied Statistics):507–554.

Riley, L. A., M. F. Dybdahl, and R. O. Hall. 2008. Invasive species impact: asymmetric interactions between invasive and endemic freshwater snails. Journal of the North American Benthological Society 27:509–520. Rohde, K. 1992. Latitudinal gradients in species diversity: the search for the primary cause. Oikos 65:514–527. Root, R. B. 1967. The niche exploitation pattern of the blue-gray gnatcatcher. Ecological Monographs 37:317–350. Rosindell, J., S. J. Cornell, S. P. Hubbell, and R. S. Etienne. 2010. Protracted speciation revitalizes the neutral

theory of biodiversity. Ecology Letters 13:716–727.

Rosindell, J., S. P. Hubbell, and R. S. Etienne. 2011. The unified neutral theory of biodiversity and biogeography at age ten. Trends in Ecology & Evolution 26:340–8.

Rosindell, J., S. P. Hubbell, F. He, L. J. Harmon, and R. S. Etienne. 2012. The case for ecological neutral theory. Trends in Ecology & Evolution 27:203–208.

Rundell, R. J., B. S. Holland, and R. H. Cowie. 2004. Molecular phylogeny and biogeography of the endemic Hawaiian Succineidae (Gastropoda: Pulmonata). Molecular Phylogenetics and Evolution 31:246–255. Sanchez, G. 2013. PLS path modeling with R (383rd ed.). www.gastonsanchez.com/PLS_Path_Modeling_with_R.pdf. Sanchez, G., L. Trinchera, and G. Russolillo. 2017. plspm: tools for partial least squares path modeling (pls-pm).

Comprehensive R Archive Network (CRAN). https://cran.r-project.org/package=plspm.

Sánchez-Piñero, F., and G. A. Polis. 2000. Bottom-up dynamics of allochthonous input: direct and indirect effects of seabirds on islands. Ecology 81:3117–3132.

Schamp, B., M. Horsák, and M. Hájek. 2010. Deterministic assembly of land snail communities according to species size and diet. Journal of Animal Ecology 79:803–810.

Scheffer, M., E. H. van Nes, and R. Vergnon. 2018. Toward a unifying theory of biodiversity. Proceedings of the National Academy of Sciences 115:639–641.

Schilthuizen, M. 2011. Community ecology of tropical forest snails: 30 years after Solem. Contributions to Zoology 80:1–15.

Schilthuizen, M., A. S. Cabanban, and M. Haase. 2005a. Possible speciation with gene flow in tropical cave snails. Journal of Zoological Systematics and Evolutionary Research 43:133–138.

Schilthuizen, M., H.-N. Chai, T. E. Kimsin, and J. J. Vermeulen. 2003a. Abundance and diversity of land-snails (Mollusca: Gastropoda) on limestone hills in Borneo. Raffles Bulletin of Zoology 51:35–42.

Schilthuizen, M., R. F. Hoekstra, and E. Gittenberger. 1999a. Selective increase of a rare haplotype in a land snail hybrid zone. Proceedings of the Royal Society of London B: Biological Sciences 266:2181–2185.

Schilthuizen, M., and T. Liew. 2008. The slugs and semislugs of Sabah, Malaysian Borneo (Gastropoda, Pulmonata: Veronicellidae, Rathouisiidae, Ariophantidae, Limacidae, Philomycidae). Basteria 72:287–306. Schilthuizen, M., T.-S. Liew, B. B. Elahan, and I. Lackman-Ancrenaz. 2005b. Effects of karst forest degradation on pulmonate and prosobranch land snail communities in Sabah, Malaysian Borneo. Conservation Biology 19:949–954.

Schilthuizen, M., and I. Njunjić. 2019. Cave list Lower Kinabatangan Floodplain. 10.13140/RG.2.2.26761.90726. Schilthuizen, M., R. B. Rosli, A. M. M. Ali, M. Salverda, H. van Oosten, H. Bernard, M. Ancrenaz, and I.

Lack-man-Ancrenaz. 2003b. The ecology and demography of Opisthostoma (Plectostoma) concinnum sl (Gastropoda: Diplommatinidae) on limestone outcrops along the Kinabatangan river. Pages 55–71 in M. Mohammed, B. Goossens, M. Ancrenaz, and M. Andau, editors. Lower Kinabatangan Scientific Expedition. Universiti Malaysia Sabah, Kota Kinabalu.

Schilthuizen, M., E. M. Rutten, and M. Haase. 2012. Small-scale genetic structuring in a tropical cave snail and admixture with its above-ground sister species. Biological Journal of the Linnean Society 105:727–740. Schilthuizen, M., M. Teravainen, N. F. T. K. Tawith, H. Ibrahim, S. Chea, C. P. Chuan, L. J. Daim, A. Jubaidi, M. J.

Madjapuni, and M. Sabeki. 2002. Microsnails at microscales in Borneo: distributions of Prosobranchia versus Pulmonata. Journal of Molluscan Studies 68:255–258.

Schilthuizen, M., A. van Til, M. Salverda, T.-S. Liew, S. S. James, B. bin Elahan, and J. J. Vermeulen. 2006. Microge-ographic evolution of snail shell shape and predator behavior. Evolution 60:1851–1858.

Schilthuizen, M., and J. J. Vermeulen. 2003. The land snails of the Tabin limestone hill. Pages 93–98 Tabin Limestone scientific expedition 2000. Universiti Malaysia Sabah, Kota Kinabalu.

(14)

Schilthuizen, M., J. J. Vermeulen, G. W. H. Davison, and E. Gittenberger. 1999b. Population structure in a snail species from isolated Malaysian limestone hills, inferred from ribosomal DNA sequences. Malacologia 41:283–296.

Schoener, T. W. 1968. The anolis lizards of Bimini: resource partitioning in a complex fauna. Ecology 49:704–726. Schoener, T. W. 1974. Resource partitioning in ecological communities. Science 185:27–39.

Schoener, T. W. 1983. Field experiments on interspecific competition. The American Naturalist 122:240–285. Sedlock, J. L., R. P. Jose, J. M. Vogt, L. M. J. Paguntalan, and A. B. Cariño. 2014. A survey of bats in a karst landscape

in the central Philippines. Acta Chiropterologica 16:197–211.

Seedorf, H., N. W. Griffin, V. K. Ridaura, A. Reyes, J. Cheng, F. E. Rey, M. I. Smith, G. M. Simon, R. H. Scheffrahn, D. Woebken, A. M. Spormann, W. Van Treuren, L. K. Ursell, M. Pirrung, A. Robbins-Pianka, B. L. Cantarel, V. Lombard, B. Henrissat, R. Knight, and J. I. Gordon. 2014. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell 159:253–266.

Segura, A. M., D. Calliari, C. Kruk, D. Conde, S. Bonilla, and H. Fort. 2011. Emergent neutrality drives phytoplankton species coexistence. Proceedings of the Royal Society B: Biological Sciences 278:2355–2361. Siemann, E., D. Tilman, J. Haarstad, and M. Ritchie. 1998. Experimental tests of the dependence of arthropod

diversity on plant diversity. The American Naturalist 152:738–750.

Simberloff, D. 1988. The contribution of population and community biology to conservation science. Annual Review of Ecology and Systematics 19:473–511.

Simberloff, D., and T. Dayan. 1991. The guild concept and the structure of ecological communities. Annual Review of Ecology and Systematics 22:115–143.

Slatkin, M. 1985. Rare alleles as indicators of gene flow. Evolution 39:53–65.

Sodhi, N. S., L. P. Koh, B. W. Brook, and P. K. Ng. 2004. Southeast Asian biodiversity: an impending disaster. Trends in Ecology & Evolution 19:654–660.

Sodhi, N. S., L. P. Koh, R. Clements, T. C. Wanger, J. K. Hill, K. C. Hamer, Y. Clough, T. Tscharntke, M. R. C. Posa, and T. M. Lee. 2010. Conserving Southeast Asian forest biodiversity in human-modified landscapes. Biological Conservation 143:2375–2384.

Solem, A. 1964. A collection of non-marine mollusks from Sabah. Sabah Society Journal 2:1–40.

Solem, A. 1984. A world model of land snail diversity and abundance. Pages 6–22 World-wide snails, biogeo-graphical studies on non-marine Mollusca. Brill & Backhuys, Leiden.

Sörenson, E., M. Bertos-Fortis, H. Farnelid, A. Kremp, K. Krüger, E. Lindehoff, and C. Legrand. 2019. Consistency in microbiomes in cultures of Alexandrium species isolated from brackish and marine waters. Environmental Microbiology Reports 11:425–433.

Stachowicz, J. J. 2001. Mutualism, facilitation, and the structure of ecological communities. BioScience 51:235–246.

Stadler, J., A. Trefflich, S. Klotz, and R. Brandl. 2000. Exotic plant species invade diversity hot spots: the alien flora of northwestern Kenya. Ecography 23:169–176.

Suchard, M. A., R. E. Weiss, and J. S. Sinsheimer. 2001. Bayesian selection of continuous-time Markov chain evolutionary models. Molecular Biology and Evolution 18:1001–1013.

Sykes, E. R. 1902. On a collection of land and fresh water shells from Kelantan, Malay Peninsula. Journal of Malacology 9:60–63.

Symons, F. B., and G. W. Beccaloni. 1999. Phylogenetic indices for measuring the diet breadths of phytophagous insects. Oecologia 119:427–434.

Taberlet, P., E. Coissac, F. Pompanon, C. Brochmann, and E. Willerslev. 2012. Towards next-generation biodiversity assessment using DNA metabarcoding. Molecular Ecology 21:2045–2050.

Thompson, F. G., and S. P. Dance. 1983. Non-marine mollusks of Borneo; II Pulmonata: Pupillidae, Clausiliidae; III Prosobranchia: Hydrocenidae, Helicinidae. Bulletin of the Florida State Museum, Biological Sciences 29:99–152.

Tilman, D., and S. Pacala. 1993. The maintenance of species richness in plant communities. Pages 13–25 in R. E. Ricklefs and D. Schluter, editors. Species diversity in ecological communities. University of Chicago Press, Chicago.

du Toit, J. T., and H. Olff. 2014. Generalities in grazing and browsing ecology: using across-guild comparisons to control contingencies. Oecologia 174:1075–1083.

(15)

Tweedie, M. W. F. 1961. On certain Mollusca of the Malayan limestone hills. Bulletin of the Raffles Museum 26:49–65.

Vellend, M. 2010. Conceptual synthesis in community ecology. The Quarterly Review of Biology 85:183–206. Vellend, M. 2016. The theory of ecological communities. Mpb Series: 57 ed. edition. Princeton University Press,

Princeton.

Vellend, M., D. S. Srivastava, K. M. Anderson, C. D. Brown, J. E. Jankowski, E. J. Kleynhans, N. J. B. Kraft, A. D. Letaw, A. A. M. Macdonald, J. E. Maclean, I. H. Myers‐Smith, A. R. Norris, and X. Xue. 2014. Assessing the relative importance of neutral stochasticity in ecological communities. Oikos 123:1420–1430.

Vermeulen, J. J. 1991. Notes on the non-marine molluscs of the island of Borneo 2. The genus Opisthostoma (Gastropoda Prosobranchia: Diplommatinidae). Basteria 55:139–163.

Vermeulen, J. J. 1993. Notes on the non-marine molluscs of the island of Borneo 5. The genus Diplommatina (Gastropoda Prosobranchia: Diplommatinidae). Basteria 57:3–69.

Vermeulen, J. J. 1994. Notes on the non-marine molluscs of the island of Borneo 6. The genus Opisthostoma (Gastropoda Prosobranchia: Diplommatinidae), part 2. Basteria 58:73–191.

Vermeulen, J. J. 1996a. Notes on the non-marine molluscs of the island of Borneo 8. The genus Arinia; additions to the genera Diplommatina and Opisthostoma (Gastropoda Prosobranchia: Diplommatinidae). Basteria 60:87–138.

Vermeulen, J. J. 1996b. Notes on the non-marine molluscs of the island of Borneo 7. The genus Niahia gen. nov. (Gastropoda Prosobranchia: Diplommantinidae). Basteria 60:67–69.

Vermeulen, J. J. 1999. Notes on the non-marine molluscs of the island of Borneo 9. The genera Cyclophorus,

Leptopoma, and Craspedotropis (Gastropoda Prosobranchia: Cyclophoridae). Basteria 63:139–163.

Vermeulen, J. J. 2007. Notes on the non-marine molluscs of Borneo 10. The genera Bruggennea, Gulella and

Sinoennea (Gastropoda, Pulmonata, Streptaxidae). Basteria 71:169–176.

Vermeulen, J. J., T. S. Liew, and M. Schilthuizen. 2015. Additions to the knowledge of the land snails of sabah (Malaysia, Borneo), including 48 new species. ZooKeys 2015:1–139.

Vermeulen, J. J., and A. J. Whitten. 1998. Fauna Malesiana: guide to the land snails of Bali. First edition. Backhuys Publishers, Leiden, the Netherlands.

Vermeulen, J. J., and T. Whitten. 1999. Biodiversity and cultural property in the management of limestone resources. First edition. World Bank, Washington, DC.

Vierna, J., A. Martínez-Lage, and A. M. Gonzalez-Tizon. 2009. Analysis of ITS1 and ITS2 sequences in Ensis razor shells: suitability as molecular markers at the population and species levels, and evolution of these ribosomal DNA spacers. Genome 53:23–34.

Vizzini, S., G. Signa, and A. Mazzola. 2016. Guano-derived nutrient subsidies drive food web structure in coastal ponds. PLOS ONE 11:e0151018.

Volkov, I., J. R. Banavar, S. P. Hubbell, and A. Maritan. 2003. Neutral theory and relative species abundance in ecology. Nature 424:1035–1037.

Wada, S., K. Kawakami, and S. Chiba. 2012. Snails can survive passage through a bird’s digestive system. Journal of Biogeography 39:69–73.

Wakefield, R. L., and S. N. Murray. 1998. Factors influencing food choice by the seaweed-eating marine snail

Norrisia norrisi (Trochidae). Marine Biology 130:631–642.

Waldén, H. W. 1983. Systematic and biogeographical studies of the terrestrial Gastropoda of Madeira. With an annotated check-list. Pages 255–275 Annales Zoologici Fennici.

Wallace, A. R. 1859. On the zoological geography of the Malay Archipelago. Zoological Journal of the Linnean Society 4:172–184.

Wares, J. P., and C. W. Cunningham. 2001. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution 55:2455–2469.

Warren, B. H., D. Simberloff, R. E. Ricklefs, R. Aguilee, F. L. Condamine, D. Gravel, H. Morlon, N. Mouquet, J. Rosindell, J. Casquet, E. Conti, J. Cornuault, J. M. Fernandez-Palacios, T. Hengl, S. J. Norder, K. F. Rijsdijk, I. Sanmartin, D. Strasberg, K. A. Triantis, L. M. Valente, R. J. Whittaker, R. G. Gillespie, B. C. Emerson, and C. Thebaud. 2015. Islands as model systems in ecology and evolution: prospects fifty years after MacAr-thur-Wilson. Ecology Letters 18:200–17.

Watanabe, J. M. 1984. Food preference, food quality and diets of three herbivorous gastropods (Trochidae: Tegula) in a temperate kelp forest habitat. Oecologia 62:47–52.

(16)

Watkins, B., and K. Simkiss. 1990. Interactions between soil bacteria and the molluscan alimentary tract. Journal of Molluscan Studies 56:267–274.

Webb, C. O., D. D. Ackerly, M. A. McPeek, and M. J. Donoghue. 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics 33:475–505.

Webster, N. B., T. J. M. Van Dooren, and M. Schilthuizen. 2012. Phylogenetic reconstruction and shell evolution of the Diplommatinidae (Gastropoda: Caenogastropoda). Molecular Phylogenetics and Evolution 63:625–638.

Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370.

Welcomme, R., and A. R. Berkowitz. 1991. Comparison between tropical and temperate ecosystems. Pages 356–357 in J. Cole, G. Lovett, and S. Findlay, editors. Comparative analyses of ecosystems: patterns, mechanisms, and theories. Springer, New York, NY.

Whittaker, R. H. 1972. Evolution and measurement of species diversity. Taxon 21:213–251.

Whittaker, R. J., and J. M. Fernández-Palacios. 2007. Island biogeography: ecology, evolution, and conservation. Oxford University Press, Oxford; New York.

Wickham, H. 2016. ggplot2: elegant graphics for data analysis. Springer-Verlag New York. Wiens, J. A. 1989. Spatial scaling in ecology. Functional Ecology 3:385–397.

de Winter, A. J., and E. Gittenberger. 1998. The land snail fauna of a square kilometer patch of rainforest in southwestern Cameroon: high species richness, low abundance, and seasonal fluctuations. Malacologia 40:231–250.

Winter, D. J. 2012. MMOD: an R library for the calculation of population differentiation statistics. Molecular Ecology Resources 12:1158–1160.

Wronski, T., A. Apio, N. M. Semwanga, and B. Hausdorf. 2016. Diversity patterns in the land-snail fauna of Afromontane forest in the Rwenzori Mountains in Uganda. Journal of Molluscan Studies 82:161–168. Youngblut, N. D., G. H. Reischer, W. Walters, N. Schuster, C. Walzer, G. Stalder, R. E. Ley, and A. H. Farnleitner.

2019. Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nature Communications 10:2200.

(17)

Referenties

GERELATEERDE DOCUMENTEN

Table S2.3 Population genetic results for the three snail taxa studied, Plectostoma concinnum s.l., Georissa similis s.l., and Alycaeus jagori, sorted by locus. Results are given

Path models on shell consumer community showed no significant correlation between consumer community and individual diet diversities (Figure 3.2A, Table S3.8A), for both the

28% of the individuals (from SES-values of MPD and MNTD), suggesting some level of diet choice (but see below), although this trend is weak when the diet is assessed by

We used SADISA to study the fit of the original point-mutation neutral model to our empirical Bornean land snail community data, plus a collection of seven other worldwide

However, I also found that mean diet richness (number of plant types eaten) varies strongly among species (up to 15×), and that this variation roughly correlates positively with

Echter, veel andere natuurlijke gemeenschappen lijken veel complexer in elkaar te steken (meer soorten, en verschillen in abundantie tussen soorten), en hoe deze soorten precies

During the three fieldwork trips I made to the Kinabatangan Floodplain in Sabah, Malaysian Borneo, I received the help from many colleagues, students, Bornean-based scientists,

University of Groningen Nijenborgh 7 9747 AG Groningen The Netherlands Department of Biology/Botany Osnabrück University Barbarastrasse 11 49076 Osnabrück Germany.