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The following handle holds various files of this Leiden University dissertation:

http://hdl.handle.net/1887/61131

Author: Elsland, D.M. van

Title: A bioorthogonal chemistry approach to the study of biomolecules in their ultrastructural cellular context

Issue Date: 2018-01-11

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A Bioorthogonal Chemistry approach to the study of Biomolecules in their Ultrastructural Cellular Context

PROEFSCHRIFT

ter verkrijging van

de graad van Doctor aan de Universiteit Leiden, op gezag van Rector Magnificus prof. mr. C.J.J. Stolker,

volgens het besluit van het College voor Promoties te verdedigen op donderdag 11 Januari 2018

klokke 13.45

door

Daphne Marjoleine van Elsland

geboren te Zaandam in 1989

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Promotiecommissie

Promotor Prof.dr. H. S. Overkleeft

Co-promotor Dr. S. I. van Kasteren

Overige leden Dr. I. Berlin (LUMC) Prof.dr. A. Briegel (LU)

Prof.dr.ir. A.J. Koster (LUMC)

Prof.dr. J. Klumperman (UMC Utrecht) Prof.dr. M.H.M. Noteborn (LU)

Dr. M. van der Stelt (LU)

ISBN: 978-94-6299-806-3

Printed by: Ridderprint BV, Ridderkerk Cover design: D. M. van Elsland

All rights reserved. No part of this book may be reproduced in any manner or by any means without permission.

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“The important thing is not to stop questioning.

Curiosity has its own reason for existing.”

- Albert Einstein

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Table of contents

Scope of the Thesis 7

Chapter 1 13

Electron Microscopy for Biochemical Research

Chapter 2 27

The Potential of Bioorthogonal Chemistry for Correlative Light and Electron Microscopy

Chapter 3 37

Electron Microscopy of Bioorthogonally-Labelled Biomolecules

Chapter 4 57

Correlative Light and Electron Microscopy reveals Discrepancy between Gold and Fluorescence Labelling

Chapter 5 75

Detection of Bioorthogonal Groups by Correlative Light and Electron Microscopy allows Imaging of Degraded Bacteria in Phagocytes

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Chapter 6 91 Towards Ultrastructural Imaging of Salmonella-Host Interactions using Bioorthogonal Labelling and Super-Resolution CLEM

Chapter 7 111

Towards Ultrastructural Imaging of Enzyme Activity with Correlative Light and Electron Microscopy Chapter 8 133

Summary and Future Prospects Nederlandse Samenvatting 139

List of publications 143

Curriculum Vitae English 145

Curriculum Vitae Nederlands 147

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