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University of Groningen Improving Bacillus subtilis as a cell factory for heterologous protein production by adjusting global regulatory networks Cao, Haojie

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University of Groningen

Improving Bacillus subtilis as a cell factory for heterologous protein production by adjusting

global regulatory networks

Cao, Haojie

IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below.

Document Version

Publisher's PDF, also known as Version of record

Publication date: 2018

Link to publication in University of Groningen/UMCG research database

Citation for published version (APA):

Cao, H. (2018). Improving Bacillus subtilis as a cell factory for heterologous protein production by adjusting global regulatory networks. University of Groningen.

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Improving Bacillus subtilis

as a cell factory

for heterologous

protein production

by adjusting

global regulatory networks

(3)

The work described in this thesis was carried out in Molecular Genetics Group of the Groningen Biomolecular Sciences and Biotechnology Institute (GBB) of the University of Groningen, the Netherlands. The candidate was fi nancially supported by the China Scholarship Council (CSC).

Printing of this thesis was fi nancially supported by the Graduate School of Sci-ence and Engineering and the University of Groningen.

Cover design & layout: Lovebird design

www.lovebird-design.com Printed: Eikon+

ISBN: 978-94-034-0788-3 978-94-034-0787-6 (ebook) © 2018. Haojie Cao, Groningen, the Netherlands.

All rights reserved.

Improving Bacillus subtilis as a cell

factory for heterologous protein

production by adjusting global

regulatory networks

PhD thesis

to obtain the degree of PhD at the

University of Groningen

on the authority of the

Rector Magnifi cus Prof. E. Sterken

and in accordance with

the decision by the College of Deans.

This thesis will be defended in public on

Monday 9 July 2018 at 9:00 hours

by

Haojie Cao

born on 16 March 1987

in Henan, China

(4)

The work described in this thesis was carried out in Molecular Genetics Group of the Groningen Biomolecular Sciences and Biotechnology Institute (GBB) of the University of Groningen, the Netherlands. The candidate was fi nancially supported by the China Scholarship Council (CSC).

Printing of this thesis was fi nancially supported by the Graduate School of Sci-ence and Engineering and the University of Groningen.

Cover design & layout: Lovebird design

www.lovebird-design.com Printed: Eikon+

ISBN: 978-94-034-0788-3 978-94-034-0787-6 (ebook) © 2018. Haojie Cao, Groningen, the Netherlands.

All rights reserved.

Improving Bacillus subtilis as a cell

factory for heterologous protein

production by adjusting global

regulatory networks

PhD thesis

to obtain the degree of PhD at the

University of Groningen

on the authority of the

Rector Magnifi cus Prof. E. Sterken

and in accordance with

the decision by the College of Deans.

This thesis will be defended in public on

Monday 9 July 2018 at 9:00 hours

by

Haojie Cao

born on 16 March 1987

in Henan, China

(5)

Supervisor

Prof. dr. O.P. Kuipers

Co-supervisor

Prof. dr. J.W. Veening

Assessment Committee

Prof. J.M. van Dijl

Prof. W.J. Quax

Prof. A.T. Kovacs

CONTENTS

Chapter 1

General Introduction 7

Chapter 2

Cell surface engineering of Bacillus subtilis improves pro-duction yields of heterologously expressed α-amylases 35

Chapter 3

Boosting heterologous protein production yield by adjust-ing global nitrogen and carbon metabolic regulatory net-works in Bacillus subtilis 61

Chapter 4

Stronger repression of carbon metabolic pathways and de-repression of nitrogen metabolic benefi t heterologous protein synthesis in Bacillus subtilis 91

Chapter 5

Infl uence of global gene regulatory networks on single cell heterogeneity of green fl uorescent protein production in Bacillus subtilis 121

Chapter 6

General Discussion 145 Nederlandse samenvatting 159 中文总结 165 Acknowledgments 169

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Supervisor

Prof. dr. O.P. Kuipers

Co-supervisor

Prof. dr. J.W. Veening

Assessment Committee

Prof. J.M. van Dijl

Prof. W.J. Quax

Prof. A.T. Kovacs

CONTENTS

Chapter 1

General Introduction 7

Chapter 2

Cell surface engineering of Bacillus subtilis improves pro-duction yields of heterologously expressed α-amylases 35

Chapter 3

Boosting heterologous protein production yield by adjust-ing global nitrogen and carbon metabolic regulatory net-works in Bacillus subtilis 61

Chapter 4

Stronger repression of carbon metabolic pathways and de-repression of nitrogen metabolic benefi t heterologous protein synthesis in Bacillus subtilis 91

Chapter 5

Infl uence of global gene regulatory networks on single cell heterogeneity of green fl uorescent protein production in Bacillus subtilis 121

Chapter 6

General Discussion 145 Nederlandse samenvatting 159 中文总结 165 Acknowledgments 169

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CHAPTER 1

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