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Assembly of microbial communities in replicate nutrient-cycling model ecosystems follows divergent trajectories, leading to alternate stable states - emi13849-sup-0014-suppinfo14

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Table S4. Taxonomy of sequences that were less than 1% abundant in the 16-week microcosms from Figure S5.

Taxonomy Abundance in 16-week

Microcosms (%) k__Bacteria;p__Proteobacteria;c__Betaproteobacteria 0.94 k__Bacteria;p__Lentisphaerae;c__[Lentisphaeria] 0.93 k__Bacteria;p__Firmicutes;c__Bacilli 0.40 k__Bacteria;p__Actinobacteria;c__Actinobacteria 0.37 k__Bacteria;p__TM6;c__SJA-4 0.34 k__Bacteria;p__Chlamydiae;c__Chlamydiia 0.32 k__Bacteria;p__Bacteroidetes;c__Flavobacteriia 0.24 k__Bacteria;p__Fibrobacteres;c__TG3 0.21 k__Bacteria;p__Actinobacteria;c__OPB41 0.14 k__Bacteria;p__Bacteroidetes;c__Sphingobacteriia 0.10 k__Bacteria;p__Tenericutes;c__Mollicutes 0.10 k__Bacteria;p__Planctomycetes;c__Phycisphaerae 0.090 k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae 0.078 k__Bacteria;p__Cyanobacteria;c__Chloroplast 0.067 k__Bacteria;p__Chlorobi;c__Ignavibacteria 0.059 k__Bacteria;p__Nitrospirae;c__Nitrospira 0.058 k__Bacteria;p__OP3;c__BD4-9 0.055 k__Bacteria;p__OP11;c__WCHB1-64 0.048 k__Bacteria;p__GN02;c__BD1-5 0.047 k__Bacteria;p__Acidobacteria;c__Acidobacteria-6 0.044 k__Bacteria;p__OD1;c__ 0.044 k__Bacteria;p__Armatimonadetes;c__SJA-176 0.043 k__Bacteria;p__Cyanobacteria;c__4C0d-2 0.042 k__Bacteria;p__Bacteroidetes;c__[Saprospirae] 0.036 k__Bacteria;p__Verrucomicrobia;c__[Pedosphaerae] 0.035 k__Bacteria;p__FBP;c__ 0.034 k__Bacteria;p__OP8;c__OP8_2 0.034 k__Bacteria;p__Actinobacteria;c__Thermoleophilia 0.028 k__Bacteria;p__FCPU426;c__ 0.028 k__Bacteria;p__WS3;c__PRR-12 0.028 k__Bacteria;p__Chloroflexi;c__Ellin6529 0.023 k__Bacteria;p__Cyanobacteria;c__Synechococcophycideae 0.023 k__Bacteria;p__TM6;c__SBRH58 0.019 k__Bacteria;p__Chlorobi;c__OPB56 0.018 k__Bacteria;p__Planctomycetes;c__Planctomycetia 0.018 k__Bacteria;p__Cyanobacteria;c__Nostocophycideae 0.017 k__Bacteria;p__Verrucomicrobia;c__Opitutae 0.017 k__Bacteria;p__Acidobacteria;c__BPC102 0.016 k__Bacteria;p__Chlorobi;c__BSV26 0.016 k__Bacteria;p__Synergistetes;c__Synergistia 0.016 k__Bacteria;p__Acidobacteria;c__Solibacteres 0.015 k__Bacteria;p__Acidobacteria;c__iii1-8 0.015 k__Bacteria;p__Gemmatimonadetes;c__Gemm-1 0.014

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Table S4 Continued

Taxonomy Abundance in 16-week

Microcosms (%) k__Bacteria;p__WS5;c__ 0.014 k__Archaea;p__Euryarchaeota;c__Thermoplasmata 0.012 k__Archaea;p__[Parvarchaeota];c__[Parvarchaea] 0.012 k__Bacteria;p__Actinobacteria;c__Coriobacteriia 0.012 k__Bacteria;p__Bacteroidetes;c__Cytophagia 0.011 k__Bacteria;p__Elusimicrobia;c__Elusimicrobia 0.010 k__Bacteria;p__OP11;c__OP11-2 0.010 k__Bacteria;p__Acidobacteria;c__Holophagae 0.0093 k__Bacteria;p__WS1;c__ 0.0089 k__Bacteria;p__Spirochaetes;c__[Leptospirae] 0.0086 k__Bacteria;p__Chlorobi;c__SJA-28 0.0085 k__Bacteria;p__Actinobacteria;c__Acidimicrobiia 0.0084 k__Bacteria;p__Armatimonadetes;c__SHA-37 0.0073 k__Bacteria;p__NC10;c__12-24 0.0071 k__Bacteria;p__Acidobacteria;c__Acidobacteriia 0.0068 k__Bacteria;p__Armatimonadetes;c__[Fimbriimonadia] 0.0068 k__Bacteria;p__NKB19;c__TSBW08 0.0062 k__Bacteria;p__Acidobacteria;c__OS-K 0.0058 k__Bacteria;p__Chloroflexi;c__Dehalococcoidetes 0.0057 k__Bacteria;p__SR1;c__ 0.0057 k__Archaea;p__Crenarchaeota;c__MCG 0.0054 k__Bacteria;p__Chloroflexi;c__S085 0.0053 k__Bacteria;p__OP8;c__OP8_1 0.0049 k__Bacteria;p__GN04;c__GN15 0.0048 k__Bacteria;p__OP3;c__koll11 0.0043 k__Bacteria;p__[Caldithrix];c__KSB1 0.0043 k__Bacteria;p__Verrucomicrobia;c__[Spartobacteria] 0.0041 k__Bacteria;p__Gemmatimonadetes;c__Gemmatimonadete s 0.0038 k__Bacteria;p__OP1;c__MSBL6 0.0035 k__Bacteria;p__GN04;c__ 0.0033 k__Bacteria;p__Caldiserica;c__WCHB1-03 0.0032 k__Bacteria;p__Proteobacteria;c__ 0.0031 k__Archaea;p__Crenarchaeota;c__MBGB 0.0030 k__Bacteria;p__Fusobacteria;c__Fusobacteriia 0.0027 k__Bacteria;p__LCP-89;c__SAW1_B44 0.0026 k__Archaea;p__Euryarchaeota;c__Methanomicrobia 0.0021 k__Bacteria;p__Acidobacteria;c__DA052 0.0018 k__Bacteria;Other;Other 0.0013

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